Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0152 and Shewana3_0153 are separated by 3 nucleotides Shewana3_0153 and Shewana3_0154 are separated by 69 nucleotides Shewana3_0154 and Shewana3_0155 are separated by 1 nucleotides
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Shewana3_0153: Shewana3_0153 - general secretion pathway protein F (RefSeq), at 178,677 to 179,900
_0153
Shewana3_0154: Shewana3_0154 - general secretion pathway protein G (RefSeq), at 179,970 to 180,404
_0154
Shewana3_0155: Shewana3_0155 - general secretion pathway protein H (RefSeq), at 180,406 to 180,978
_0155
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152 at 178.116 kb on - strand, within Shewana3_0152 at 178.138 kb on + strand, within Shewana3_0152 at 178.274 kb on + strand, within Shewana3_0152 at 178.358 kb on + strand, within Shewana3_0152 at 178.366 kb on - strand, within Shewana3_0152 at 178.390 kb on + strand, within Shewana3_0152 at 178.521 kb on - strand at 178.647 kb on + strand at 178.674 kb on + strand at 178.676 kb on - strand at 178.741 kb on - strand at 179.023 kb on + strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.474 kb on + strand, within Shewana3_0153 at 179.483 kb on + strand, within Shewana3_0153 at 179.491 kb on - strand, within Shewana3_0153 at 179.530 kb on + strand, within Shewana3_0153 at 179.598 kb on + strand, within Shewana3_0153 at 179.637 kb on + strand, within Shewana3_0153 at 179.654 kb on + strand, within Shewana3_0153 at 179.666 kb on + strand, within Shewana3_0153 at 179.698 kb on + strand, within Shewana3_0153 at 179.711 kb on - strand, within Shewana3_0153 at 179.728 kb on - strand, within Shewana3_0153 at 179.786 kb on + strand at 179.995 kb on + strand at 180.294 kb on + strand, within Shewana3_0154 at 180.314 kb on - strand, within Shewana3_0154 at 180.329 kb on + strand, within Shewana3_0154 at 180.405 kb on + strand at 180.413 kb on - strand at 180.683 kb on - strand, within Shewana3_0155 at 180.748 kb on + strand, within Shewana3_0155 at 180.792 kb on + strand, within Shewana3_0155 at 180.877 kb on - strand, within Shewana3_0155
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 177,934 + Shewana3_0152 0.53 +5.6 178,087 - Shewana3_0152 0.63 +3.0 178,108 + Shewana3_0152 0.64 +2.8 178,116 - Shewana3_0152 0.64 +2.9 178,138 + Shewana3_0152 0.66 +3.1 178,274 + Shewana3_0152 0.74 +2.2 178,358 + Shewana3_0152 0.80 +4.4 178,366 - Shewana3_0152 0.80 +1.6 178,390 + Shewana3_0152 0.82 +2.7 178,521 - +2.9 178,647 + +2.6 178,674 + +0.6 178,676 - +3.1 178,741 - +2.2 179,023 + Shewana3_0153 0.28 +3.2 179,031 - Shewana3_0153 0.29 +3.4 179,031 - Shewana3_0153 0.29 +3.0 179,474 + Shewana3_0153 0.65 +3.7 179,483 + Shewana3_0153 0.66 +2.9 179,491 - Shewana3_0153 0.67 +3.9 179,530 + Shewana3_0153 0.70 +3.2 179,598 + Shewana3_0153 0.75 +3.0 179,637 + Shewana3_0153 0.78 +1.9 179,654 + Shewana3_0153 0.80 +8.0 179,666 + Shewana3_0153 0.81 +3.5 179,698 + Shewana3_0153 0.83 +3.2 179,711 - Shewana3_0153 0.84 +1.8 179,728 - Shewana3_0153 0.86 +0.6 179,786 + +1.5 179,995 + +5.1 180,294 + Shewana3_0154 0.74 +2.9 180,314 - Shewana3_0154 0.79 +2.1 180,329 + Shewana3_0154 0.83 +2.0 180,405 + +0.3 180,413 - +3.5 180,683 - Shewana3_0155 0.48 +1.7 180,748 + Shewana3_0155 0.60 +2.3 180,792 + Shewana3_0155 0.67 +2.5 180,877 - Shewana3_0155 0.82 +1.7
Or see this region's nucleotide sequence