Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0151 and Shewana3_0152 overlap by 4 nucleotides Shewana3_0152 and Shewana3_0153 are separated by 3 nucleotides
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Shewana3_0153: Shewana3_0153 - general secretion pathway protein F (RefSeq), at 178,677 to 179,900
_0153
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.290 kb on + strand, within Shewana3_0151 at 176.298 kb on - strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.477 kb on + strand, within Shewana3_0151 at 176.528 kb on - strand, within Shewana3_0151 at 176.677 kb on - strand, within Shewana3_0151 at 176.733 kb on - strand, within Shewana3_0151 at 176.734 kb on + strand, within Shewana3_0151 at 177.033 kb on - strand at 177.033 kb on - strand at 177.040 kb on + strand at 177.181 kb on + strand at 177.284 kb on + strand, within Shewana3_0152 at 177.292 kb on - strand, within Shewana3_0152 at 177.364 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152 at 178.116 kb on - strand, within Shewana3_0152 at 178.138 kb on + strand, within Shewana3_0152 at 178.274 kb on + strand, within Shewana3_0152 at 178.358 kb on + strand, within Shewana3_0152 at 178.366 kb on - strand, within Shewana3_0152 at 178.390 kb on + strand, within Shewana3_0152 at 178.521 kb on - strand at 178.647 kb on + strand at 178.674 kb on + strand at 178.676 kb on - strand at 178.741 kb on - strand at 179.023 kb on + strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.474 kb on + strand, within Shewana3_0153 at 179.483 kb on + strand, within Shewana3_0153 at 179.491 kb on - strand, within Shewana3_0153 at 179.530 kb on + strand, within Shewana3_0153 at 179.598 kb on + strand, within Shewana3_0153 at 179.637 kb on + strand, within Shewana3_0153 at 179.654 kb on + strand, within Shewana3_0153 at 179.666 kb on + strand, within Shewana3_0153
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 176,223 + Shewana3_0151 0.58 +4.2 176,223 + Shewana3_0151 0.58 +3.2 176,223 + Shewana3_0151 0.58 +1.5 176,223 + Shewana3_0151 0.58 +2.6 176,231 - Shewana3_0151 0.58 +2.9 176,231 - Shewana3_0151 0.58 +2.8 176,290 + Shewana3_0151 0.61 +2.4 176,298 - Shewana3_0151 0.61 +3.1 176,349 + Shewana3_0151 0.64 +4.2 176,349 + Shewana3_0151 0.64 +3.0 176,349 + Shewana3_0151 0.64 +2.0 176,477 + Shewana3_0151 0.70 +2.9 176,528 - Shewana3_0151 0.72 +2.9 176,677 - Shewana3_0151 0.79 +2.5 176,733 - Shewana3_0151 0.82 +2.6 176,734 + Shewana3_0151 0.82 +2.2 177,033 - +3.1 177,033 - +3.7 177,040 + +1.9 177,181 + +3.0 177,284 + Shewana3_0152 0.11 +2.3 177,292 - Shewana3_0152 0.12 +4.1 177,364 - Shewana3_0152 0.16 +2.9 177,547 - Shewana3_0152 0.28 +4.2 177,547 - Shewana3_0152 0.28 +2.8 177,934 + Shewana3_0152 0.53 +5.6 178,087 - Shewana3_0152 0.63 +3.0 178,108 + Shewana3_0152 0.64 +2.8 178,116 - Shewana3_0152 0.64 +2.9 178,138 + Shewana3_0152 0.66 +3.1 178,274 + Shewana3_0152 0.74 +2.2 178,358 + Shewana3_0152 0.80 +4.4 178,366 - Shewana3_0152 0.80 +1.6 178,390 + Shewana3_0152 0.82 +2.7 178,521 - +2.9 178,647 + +2.6 178,674 + +0.6 178,676 - +3.1 178,741 - +2.2 179,023 + Shewana3_0153 0.28 +3.2 179,031 - Shewana3_0153 0.29 +3.4 179,031 - Shewana3_0153 0.29 +3.0 179,474 + Shewana3_0153 0.65 +3.7 179,483 + Shewana3_0153 0.66 +2.9 179,491 - Shewana3_0153 0.67 +3.9 179,530 + Shewana3_0153 0.70 +3.2 179,598 + Shewana3_0153 0.75 +3.0 179,637 + Shewana3_0153 0.78 +1.9 179,654 + Shewana3_0153 0.80 +8.0 179,666 + Shewana3_0153 0.81 +3.5
Or see this region's nucleotide sequence