Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0120 and Shewana3_0121 are separated by 4 nucleotides Shewana3_0121 and Shewana3_0122 are separated by 63 nucleotides Shewana3_0122 and Shewana3_0123 are separated by 293 nucleotides
Shewana3_0120: Shewana3_0120 - hypothetical protein (RefSeq), at 135,406 to 135,855
_0120
Shewana3_0121: Shewana3_0121 - hypothetical protein (RefSeq), at 135,860 to 136,660
_0121
Shewana3_0122: Shewana3_0122 - hypothetical protein (RefSeq), at 136,724 to 138,367
_0122
Shewana3_0123: Shewana3_0123 - multiple antibiotic resistance (MarC)-related proteins (RefSeq), at 138,661 to 139,254
_0123
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 135.936 kb on - strand at 136.301 kb on - strand, within Shewana3_0121 at 136.457 kb on - strand, within Shewana3_0121 at 136.510 kb on - strand, within Shewana3_0121 at 136.663 kb on - strand at 136.721 kb on + strand at 136.729 kb on - strand at 136.923 kb on - strand, within Shewana3_0122 at 137.026 kb on - strand, within Shewana3_0122 at 137.085 kb on + strand, within Shewana3_0122 at 137.319 kb on - strand, within Shewana3_0122 at 137.421 kb on - strand, within Shewana3_0122 at 137.640 kb on + strand, within Shewana3_0122 at 137.695 kb on - strand, within Shewana3_0122 at 137.768 kb on + strand, within Shewana3_0122 at 137.776 kb on - strand, within Shewana3_0122 at 137.811 kb on - strand, within Shewana3_0122 at 137.917 kb on + strand, within Shewana3_0122 at 138.003 kb on - strand, within Shewana3_0122 at 138.109 kb on + strand, within Shewana3_0122 at 138.117 kb on - strand, within Shewana3_0122 at 138.238 kb on + strand at 138.238 kb on + strand at 138.246 kb on - strand at 138.246 kb on - strand at 138.337 kb on - strand at 138.501 kb on + strand at 138.518 kb on + strand at 138.552 kb on + strand at 138.556 kb on + strand at 139.049 kb on + strand, within Shewana3_0123 at 139.199 kb on - strand at 139.204 kb on + strand at 139.268 kb on - strand at 139.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 135,936 - +0.3 136,301 - Shewana3_0121 0.55 +0.3 136,457 - Shewana3_0121 0.75 +0.5 136,510 - Shewana3_0121 0.81 -0.7 136,663 - -0.0 136,721 + +0.2 136,729 - -0.3 136,923 - Shewana3_0122 0.12 -1.5 137,026 - Shewana3_0122 0.18 -2.1 137,085 + Shewana3_0122 0.22 -2.1 137,319 - Shewana3_0122 0.36 -1.4 137,421 - Shewana3_0122 0.42 -1.6 137,640 + Shewana3_0122 0.56 +0.4 137,695 - Shewana3_0122 0.59 -0.6 137,768 + Shewana3_0122 0.64 -1.6 137,776 - Shewana3_0122 0.64 -0.5 137,811 - Shewana3_0122 0.66 +0.2 137,917 + Shewana3_0122 0.73 -0.4 138,003 - Shewana3_0122 0.78 -0.4 138,109 + Shewana3_0122 0.84 -1.4 138,117 - Shewana3_0122 0.85 -1.5 138,238 + -1.7 138,238 + -1.1 138,246 - -1.1 138,246 - -1.0 138,337 - -0.5 138,501 + +0.1 138,518 + +0.0 138,552 + -0.3 138,556 + -0.3 139,049 + Shewana3_0123 0.65 +7.6 139,199 - +0.3 139,204 + +0.0 139,268 - -0.2 139,319 + +0.5
Or see this region's nucleotide sequence