Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0076 and Shewana3_0077 are separated by 92 nucleotides Shewana3_0077 and Shewana3_0078 are separated by 46 nucleotides Shewana3_0078 and Shewana3_0079 overlap by 4 nucleotides
Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676
_0076
Shewana3_0077: Shewana3_0077 - GntR family transcriptional regulator (RefSeq), at 89,769 to 90,134
_0077
Shewana3_0078: Shewana3_0078 - ABC transporter related (RefSeq), at 90,181 to 91,044
_0078
Shewana3_0079: Shewana3_0079 - hypothetical protein (RefSeq), at 91,041 to 92,351
_0079
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1 at 88.838 kb on - strand, within Shewana3_0076 at 88.852 kb on + strand, within Shewana3_0076 at 88.861 kb on + strand, within Shewana3_0076 at 89.023 kb on - strand, within Shewana3_0076 at 89.046 kb on - strand, within Shewana3_0076 at 89.100 kb on + strand, within Shewana3_0076 at 89.216 kb on - strand, within Shewana3_0076 at 89.299 kb on + strand, within Shewana3_0076 at 89.307 kb on - strand, within Shewana3_0076 at 89.423 kb on - strand, within Shewana3_0076 at 89.458 kb on + strand, within Shewana3_0076 at 89.472 kb on + strand, within Shewana3_0076 at 89.500 kb on - strand, within Shewana3_0076 at 89.661 kb on - strand at 89.828 kb on - strand, within Shewana3_0077 at 89.885 kb on - strand, within Shewana3_0077 at 89.968 kb on + strand, within Shewana3_0077 at 90.425 kb on - strand, within Shewana3_0078 at 90.454 kb on - strand, within Shewana3_0078 at 90.569 kb on + strand, within Shewana3_0078 at 90.569 kb on + strand, within Shewana3_0078 at 90.589 kb on + strand, within Shewana3_0078 at 90.602 kb on + strand, within Shewana3_0078 at 90.610 kb on - strand, within Shewana3_0078 at 90.612 kb on + strand, within Shewana3_0078 at 90.625 kb on + strand, within Shewana3_0078 at 90.677 kb on - strand, within Shewana3_0078 at 91.001 kb on - strand at 91.040 kb on + strand at 91.055 kb on + strand at 91.084 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 88,838 - Shewana3_0076 0.48 -0.6 88,852 + Shewana3_0076 0.49 -0.4 88,861 + Shewana3_0076 0.50 -0.2 89,023 - Shewana3_0076 0.60 +0.2 89,046 - Shewana3_0076 0.61 -1.1 89,100 + Shewana3_0076 0.64 +0.8 89,216 - Shewana3_0076 0.72 +0.6 89,299 + Shewana3_0076 0.77 -0.7 89,307 - Shewana3_0076 0.77 -0.8 89,423 - Shewana3_0076 0.84 +0.3 89,458 + Shewana3_0076 0.86 +0.0 89,472 + Shewana3_0076 0.87 -0.7 89,500 - Shewana3_0076 0.89 -0.4 89,661 - +0.2 89,828 - Shewana3_0077 0.16 -1.4 89,885 - Shewana3_0077 0.32 -0.4 89,968 + Shewana3_0077 0.54 -1.4 90,425 - Shewana3_0078 0.28 -2.0 90,454 - Shewana3_0078 0.32 -0.4 90,569 + Shewana3_0078 0.45 -1.0 90,569 + Shewana3_0078 0.45 +0.4 90,589 + Shewana3_0078 0.47 -0.4 90,602 + Shewana3_0078 0.49 -0.9 90,610 - Shewana3_0078 0.50 -0.2 90,612 + Shewana3_0078 0.50 -2.1 90,625 + Shewana3_0078 0.51 -0.1 90,677 - Shewana3_0078 0.57 +0.4 91,001 - -0.3 91,040 + -0.3 91,055 + -0.9 91,084 + -0.3
Or see this region's nucleotide sequence