Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0055

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpsA and Shewana3_0055 are separated by 238 nucleotidesShewana3_0055 and Shewana3_0056 are separated by 722 nucleotides Shewana3_0054: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 63,221 to 64,237 gpsA Shewana3_0055: Shewana3_0055 - hypothetical protein (RefSeq), at 64,476 to 65,660 _0055 Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246 _0056 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1 2 3 4at 64.344 kb on - strandat 64.397 kb on + strandat 64.404 kb on - strandat 64.474 kb on - strandat 64.518 kb on + strandat 64.744 kb on + strand, within Shewana3_0055at 64.765 kb on + strand, within Shewana3_0055at 64.767 kb on - strand, within Shewana3_0055at 64.846 kb on + strand, within Shewana3_0055at 64.925 kb on + strand, within Shewana3_0055at 64.988 kb on + strand, within Shewana3_0055at 64.989 kb on + strand, within Shewana3_0055at 64.989 kb on + strand, within Shewana3_0055at 65.178 kb on + strand, within Shewana3_0055at 65.186 kb on - strand, within Shewana3_0055at 65.315 kb on + strand, within Shewana3_0055at 65.323 kb on - strand, within Shewana3_0055at 65.331 kb on - strand, within Shewana3_0055at 65.333 kb on + strand, within Shewana3_0055at 65.358 kb on + strand, within Shewana3_0055at 65.373 kb on + strand, within Shewana3_0055at 65.388 kb on + strand, within Shewana3_0055at 65.459 kb on - strand, within Shewana3_0055at 65.495 kb on + strand, within Shewana3_0055at 65.512 kb on + strand, within Shewana3_0055at 65.520 kb on - strand, within Shewana3_0055at 65.520 kb on - strand, within Shewana3_0055at 65.520 kb on - strand, within Shewana3_0055at 65.559 kb on - strandat 65.585 kb on - strandat 65.621 kb on + strandat 65.764 kb on - strandat 65.820 kb on + strandat 65.835 kb on - strandat 66.054 kb on - strandat 66.071 kb on - strandat 66.109 kb on - strandat 66.138 kb on - strandat 66.212 kb on + strandat 66.393 kb on - strandat 66.412 kb on + strandat 66.412 kb on + strandat 66.412 kb on + strandat 66.412 kb on + strandat 66.412 kb on + strandat 66.420 kb on - strandat 66.420 kb on - strandat 66.420 kb on - strandat 66.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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64,344 - +0.1
64,397 + -0.5
64,404 - +0.3
64,474 - -0.9
64,518 + +0.2
64,744 + Shewana3_0055 0.23 -0.2
64,765 + Shewana3_0055 0.24 -0.3
64,767 - Shewana3_0055 0.25 -0.1
64,846 + Shewana3_0055 0.31 +4.1
64,925 + Shewana3_0055 0.38 +0.5
64,988 + Shewana3_0055 0.43 -0.4
64,989 + Shewana3_0055 0.43 +0.1
64,989 + Shewana3_0055 0.43 -0.6
65,178 + Shewana3_0055 0.59 -0.9
65,186 - Shewana3_0055 0.60 +0.3
65,315 + Shewana3_0055 0.71 -0.1
65,323 - Shewana3_0055 0.71 -1.2
65,331 - Shewana3_0055 0.72 +0.4
65,333 + Shewana3_0055 0.72 -0.6
65,358 + Shewana3_0055 0.74 +0.3
65,373 + Shewana3_0055 0.76 -0.4
65,388 + Shewana3_0055 0.77 +0.1
65,459 - Shewana3_0055 0.83 -0.6
65,495 + Shewana3_0055 0.86 +0.5
65,512 + Shewana3_0055 0.87 +0.7
65,520 - Shewana3_0055 0.88 -0.0
65,520 - Shewana3_0055 0.88 -0.1
65,520 - Shewana3_0055 0.88 -0.0
65,559 - -0.1
65,585 - -0.1
65,621 + +0.4
65,764 - +0.0
65,820 + +0.3
65,835 - -1.1
66,054 - -1.3
66,071 - +0.6
66,109 - +2.7
66,138 - +0.6
66,212 + +0.5
66,393 - -0.8
66,412 + +1.2
66,412 + -1.1
66,412 + +0.0
66,412 + +0.1
66,412 + -0.5
66,420 - +0.1
66,420 - +0.1
66,420 - -0.2
66,420 - +0.6

Or see this region's nucleotide sequence