Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4380 and Shewana3_4381 are separated by 402 nucleotides Shewana3_4381 and Shewana3_4382 are separated by 21 nucleotides Shewana3_4382 and Shewana3_4383 are separated by 19 nucleotides Shewana3_4383 and Shewana3_4384 overlap by 11 nucleotides
Shewana3_4380: Shewana3_4380 - hypothetical protein (RefSeq), at 266,975 to 267,244
_4380
Shewana3_4381: Shewana3_4381 - hypothetical protein (RefSeq), at 267,647 to 267,979
_4381
Shewana3_4382: Shewana3_4382 - hypothetical protein (RefSeq), at 268,001 to 268,531
_4382
Shewana3_4383: Shewana3_4383 - hypothetical protein (RefSeq), at 268,551 to 269,246
_4383
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Position (kb) 268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 267.007 kb on + strand, within Shewana3_4380 at 267.015 kb on - strand, within Shewana3_4380 at 267.015 kb on - strand, within Shewana3_4380 at 267.142 kb on + strand, within Shewana3_4380 at 267.150 kb on - strand, within Shewana3_4380 at 267.208 kb on - strand, within Shewana3_4380 at 267.218 kb on - strand at 267.274 kb on + strand at 267.362 kb on + strand at 267.367 kb on + strand at 267.370 kb on - strand at 267.370 kb on - strand at 267.384 kb on + strand at 267.437 kb on + strand at 267.490 kb on + strand at 267.492 kb on - strand at 267.899 kb on - strand, within Shewana3_4381 at 267.916 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.935 kb on + strand, within Shewana3_4381 at 267.961 kb on - strand at 267.961 kb on - strand at 268.053 kb on + strand at 268.053 kb on + strand at 268.061 kb on - strand, within Shewana3_4382 at 268.186 kb on - strand, within Shewana3_4382 at 268.205 kb on + strand, within Shewana3_4382 at 268.228 kb on + strand, within Shewana3_4382 at 268.319 kb on - strand, within Shewana3_4382 at 268.336 kb on + strand, within Shewana3_4382 at 268.359 kb on - strand, within Shewana3_4382 at 268.433 kb on - strand, within Shewana3_4382 at 268.567 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.603 kb on - strand at 268.613 kb on - strand at 268.689 kb on - strand, within Shewana3_4383 at 268.790 kb on + strand, within Shewana3_4383 at 268.798 kb on - strand, within Shewana3_4383 at 269.085 kb on - strand, within Shewana3_4383 at 269.226 kb on - strand at 269.391 kb on + strand at 269.399 kb on - strand at 269.463 kb on - strand at 269.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 267,007 + Shewana3_4380 0.12 +0.6 267,015 - Shewana3_4380 0.15 +0.1 267,015 - Shewana3_4380 0.15 -1.2 267,142 + Shewana3_4380 0.62 -0.3 267,150 - Shewana3_4380 0.65 -1.2 267,208 - Shewana3_4380 0.86 +0.6 267,218 - +0.5 267,274 + -0.8 267,362 + -0.4 267,367 + +0.3 267,370 - +0.2 267,370 - -0.2 267,384 + +0.3 267,437 + +0.5 267,490 + -1.1 267,492 - +2.0 267,899 - Shewana3_4381 0.76 +0.7 267,916 + Shewana3_4381 0.81 -0.3 267,917 + Shewana3_4381 0.81 +1.6 267,917 + Shewana3_4381 0.81 +2.0 267,917 + Shewana3_4381 0.81 +2.6 267,917 + Shewana3_4381 0.81 +2.6 267,925 - Shewana3_4381 0.83 +0.5 267,925 - Shewana3_4381 0.83 -1.0 267,925 - Shewana3_4381 0.83 -0.2 267,925 - Shewana3_4381 0.83 -0.7 267,925 - Shewana3_4381 0.83 -1.8 267,925 - Shewana3_4381 0.83 +0.0 267,925 - Shewana3_4381 0.83 -0.7 267,925 - Shewana3_4381 0.83 +0.0 267,935 + Shewana3_4381 0.86 +1.2 267,961 - -0.6 267,961 - -0.2 268,053 + -0.6 268,053 + +2.2 268,061 - Shewana3_4382 0.11 -0.8 268,186 - Shewana3_4382 0.35 -0.2 268,205 + Shewana3_4382 0.38 -1.2 268,228 + Shewana3_4382 0.43 -0.9 268,319 - Shewana3_4382 0.60 -0.7 268,336 + Shewana3_4382 0.63 +0.1 268,359 - Shewana3_4382 0.67 -0.8 268,433 - Shewana3_4382 0.81 -0.5 268,567 + +1.2 268,595 + +1.2 268,595 + +0.8 268,595 + +1.6 268,595 + -0.5 268,595 + +1.0 268,595 + +2.6 268,603 - -0.9 268,613 - -0.5 268,689 - Shewana3_4383 0.20 -0.2 268,790 + Shewana3_4383 0.34 +0.4 268,798 - Shewana3_4383 0.35 -0.4 269,085 - Shewana3_4383 0.77 -0.5 269,226 - -0.6 269,391 + -0.0 269,399 - +0.5 269,463 - -0.7 269,477 + +1.2
Or see this region's nucleotide sequence