Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4367 and Shewana3_4368 are separated by 205 nucleotides Shewana3_4368 and Shewana3_4369 are separated by 112 nucleotides Shewana3_4369 and Shewana3_4370 are separated by 189 nucleotides
Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713
_4367
Shewana3_4368: Shewana3_4368 - chromosome segregation ATPases-like protein (RefSeq), at 256,919 to 257,974
_4368
Shewana3_4369: Shewana3_4369 - hypothetical protein (RefSeq), at 258,087 to 258,452
_4369
Shewana3_4370: Shewana3_4370 - hypothetical protein (RefSeq), at 258,642 to 259,220
_4370
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 256.105 kb on - strand, within Shewana3_4367 at 256.141 kb on - strand, within Shewana3_4367 at 256.191 kb on + strand, within Shewana3_4367 at 256.339 kb on - strand, within Shewana3_4367 at 256.351 kb on - strand, within Shewana3_4367 at 256.421 kb on + strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.581 kb on - strand, within Shewana3_4367 at 256.634 kb on + strand at 256.949 kb on - strand at 257.076 kb on + strand, within Shewana3_4368 at 257.344 kb on + strand, within Shewana3_4368 at 257.471 kb on - strand, within Shewana3_4368 at 258.148 kb on + strand, within Shewana3_4369 at 258.200 kb on + strand, within Shewana3_4369 at 258.206 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.217 kb on + strand, within Shewana3_4369 at 258.228 kb on - strand, within Shewana3_4369 at 258.269 kb on + strand, within Shewana3_4369 at 258.385 kb on + strand, within Shewana3_4369 at 258.396 kb on + strand, within Shewana3_4369 at 258.421 kb on + strand at 258.421 kb on + strand at 258.456 kb on + strand at 258.483 kb on + strand at 258.483 kb on + strand at 258.491 kb on - strand at 258.497 kb on + strand at 258.543 kb on - strand at 258.590 kb on + strand at 258.603 kb on - strand at 258.607 kb on - strand at 258.640 kb on + strand at 258.640 kb on + strand at 258.640 kb on + strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.653 kb on - strand at 258.664 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.672 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.680 kb on - strand at 258.702 kb on + strand at 258.703 kb on - strand, within Shewana3_4370 at 258.703 kb on - strand, within Shewana3_4370 at 258.703 kb on - strand, within Shewana3_4370 at 258.764 kb on + strand, within Shewana3_4370 at 258.784 kb on - strand, within Shewana3_4370 at 258.784 kb on - strand, within Shewana3_4370 at 258.872 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 256,105 - Shewana3_4367 0.40 +0.4 256,141 - Shewana3_4367 0.43 -0.6 256,191 + Shewana3_4367 0.48 -0.0 256,339 - Shewana3_4367 0.63 +1.3 256,351 - Shewana3_4367 0.64 +0.4 256,421 + Shewana3_4367 0.71 -0.5 256,485 - Shewana3_4367 0.77 +0.6 256,485 - Shewana3_4367 0.77 -0.2 256,581 - Shewana3_4367 0.87 -0.1 256,634 + -1.2 256,949 - -0.4 257,076 + Shewana3_4368 0.15 -1.5 257,344 + Shewana3_4368 0.40 -0.3 257,471 - Shewana3_4368 0.52 -1.2 258,148 + Shewana3_4369 0.17 +0.5 258,200 + Shewana3_4369 0.31 -0.1 258,206 - Shewana3_4369 0.33 +0.8 258,208 - Shewana3_4369 0.33 +0.8 258,208 - Shewana3_4369 0.33 +2.2 258,208 - Shewana3_4369 0.33 +1.6 258,217 + Shewana3_4369 0.36 -0.1 258,228 - Shewana3_4369 0.39 -0.4 258,269 + Shewana3_4369 0.50 -0.6 258,385 + Shewana3_4369 0.81 +0.3 258,396 + Shewana3_4369 0.84 +0.1 258,421 + -2.1 258,421 + -0.5 258,456 + +1.2 258,483 + -0.0 258,483 + -0.8 258,491 - +1.6 258,497 + +0.9 258,543 - +0.1 258,590 + +2.6 258,603 - +0.5 258,607 - -0.0 258,640 + +1.0 258,640 + +3.6 258,640 + +0.3 258,648 - +0.4 258,648 - +0.2 258,648 - -0.2 258,648 - +0.9 258,648 - -0.6 258,648 - +0.2 258,648 - -0.3 258,648 - +0.1 258,648 - +1.0 258,648 - -1.5 258,648 - +0.8 258,648 - +0.3 258,648 - -1.2 258,653 - -0.0 258,664 + +0.2 258,671 + +2.0 258,671 + +0.4 258,671 + +3.6 258,671 + +2.6 258,672 - +0.5 258,679 - +1.8 258,679 - +0.4 258,679 - -0.1 258,679 - -1.2 258,679 - -0.8 258,679 - -0.6 258,679 - -1.7 258,680 - -0.9 258,702 + +3.6 258,703 - Shewana3_4370 0.11 +2.0 258,703 - Shewana3_4370 0.11 -1.1 258,703 - Shewana3_4370 0.11 -0.2 258,764 + Shewana3_4370 0.21 +2.0 258,784 - Shewana3_4370 0.25 -1.6 258,784 - Shewana3_4370 0.25 +1.5 258,872 - Shewana3_4370 0.40 -0.1 258,929 - Shewana3_4370 0.50 +0.3 258,929 - Shewana3_4370 0.50 -0.6 258,929 - Shewana3_4370 0.50 -0.3
Or see this region's nucleotide sequence