Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4318 and Shewana3_4319 are separated by 2 nucleotides Shewana3_4319 and Shewana3_4320 are separated by 125 nucleotides
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793
_4319
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Position (kb) 209
210 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 208.466 kb on + strand, within Shewana3_4318 at 208.471 kb on + strand, within Shewana3_4318 at 208.479 kb on - strand, within Shewana3_4318 at 208.507 kb on + strand, within Shewana3_4318 at 208.542 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.616 kb on - strand, within Shewana3_4318 at 208.803 kb on + strand, within Shewana3_4318 at 208.977 kb on + strand at 208.985 kb on - strand at 209.038 kb on + strand at 209.163 kb on + strand at 209.381 kb on + strand, within Shewana3_4319 at 209.472 kb on + strand, within Shewana3_4319 at 209.608 kb on + strand, within Shewana3_4319 at 209.723 kb on - strand, within Shewana3_4319 at 209.764 kb on - strand at 209.767 kb on + strand at 209.898 kb on + strand at 209.905 kb on + strand at 209.918 kb on - strand at 209.925 kb on - strand at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320 at 210.325 kb on - strand, within Shewana3_4320 at 210.552 kb on + strand, within Shewana3_4320 at 210.646 kb on + strand, within Shewana3_4320
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 208,466 + Shewana3_4318 0.74 +0.1 208,471 + Shewana3_4318 0.74 -0.0 208,479 - Shewana3_4318 0.74 -0.1 208,507 + Shewana3_4318 0.75 -0.3 208,542 + Shewana3_4318 0.76 -0.0 208,608 + Shewana3_4318 0.78 -0.6 208,608 + Shewana3_4318 0.78 -0.3 208,616 - Shewana3_4318 0.79 -0.2 208,803 + Shewana3_4318 0.85 +0.4 208,977 + -1.6 208,985 - +0.6 209,038 + +0.6 209,163 + -1.7 209,381 + Shewana3_4319 0.26 -0.3 209,472 + Shewana3_4319 0.43 -0.5 209,608 + Shewana3_4319 0.67 -0.0 209,723 - Shewana3_4319 0.87 +5.0 209,764 - +0.0 209,767 + -1.4 209,898 + -1.4 209,905 + +0.5 209,918 - +0.5 209,925 - -0.2 210,099 + Shewana3_4320 0.17 -0.1 210,177 - Shewana3_4320 0.24 +0.4 210,190 + Shewana3_4320 0.25 +0.2 210,325 - Shewana3_4320 0.38 +0.2 210,552 + Shewana3_4320 0.59 -1.0 210,646 + Shewana3_4320 0.67 -0.8
Or see this region's nucleotide sequence