Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4317 and Shewana3_4318 are separated by 113 nucleotides Shewana3_4318 and Shewana3_4319 are separated by 2 nucleotides Shewana3_4319 and Shewana3_4320 are separated by 125 nucleotides
Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222
_4317
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793
_4319
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Position (kb) 206
207
208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 205.379 kb on + strand, within Shewana3_4317 at 205.521 kb on + strand, within Shewana3_4317 at 205.521 kb on - strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.709 kb on + strand, within Shewana3_4317 at 205.828 kb on - strand, within Shewana3_4317 at 205.831 kb on + strand, within Shewana3_4317 at 205.848 kb on - strand, within Shewana3_4317 at 205.906 kb on - strand, within Shewana3_4317 at 205.916 kb on - strand, within Shewana3_4317 at 205.952 kb on + strand, within Shewana3_4317 at 206.032 kb on - strand, within Shewana3_4317 at 206.134 kb on - strand at 206.404 kb on + strand at 206.562 kb on - strand at 206.562 kb on - strand at 206.631 kb on + strand, within Shewana3_4318 at 206.636 kb on + strand, within Shewana3_4318 at 206.644 kb on - strand, within Shewana3_4318 at 206.658 kb on + strand, within Shewana3_4318 at 206.659 kb on - strand, within Shewana3_4318 at 206.707 kb on - strand, within Shewana3_4318 at 206.954 kb on - strand, within Shewana3_4318 at 207.013 kb on - strand, within Shewana3_4318 at 207.048 kb on + strand, within Shewana3_4318 at 207.160 kb on + strand, within Shewana3_4318 at 207.238 kb on + strand, within Shewana3_4318 at 207.306 kb on - strand, within Shewana3_4318 at 207.353 kb on - strand, within Shewana3_4318 at 207.353 kb on - strand, within Shewana3_4318 at 207.411 kb on + strand, within Shewana3_4318 at 207.419 kb on - strand, within Shewana3_4318 at 207.436 kb on + strand, within Shewana3_4318 at 207.444 kb on - strand, within Shewana3_4318 at 207.737 kb on - strand, within Shewana3_4318 at 207.795 kb on + strand, within Shewana3_4318 at 207.832 kb on + strand, within Shewana3_4318 at 207.870 kb on - strand, within Shewana3_4318 at 207.876 kb on + strand, within Shewana3_4318 at 207.928 kb on + strand, within Shewana3_4318 at 208.219 kb on + strand, within Shewana3_4318 at 208.466 kb on + strand, within Shewana3_4318 at 208.471 kb on + strand, within Shewana3_4318 at 208.479 kb on - strand, within Shewana3_4318 at 208.507 kb on + strand, within Shewana3_4318 at 208.542 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.616 kb on - strand, within Shewana3_4318 at 208.803 kb on + strand, within Shewana3_4318 at 208.977 kb on + strand at 208.985 kb on - strand at 209.038 kb on + strand at 209.163 kb on + strand at 209.381 kb on + strand, within Shewana3_4319 at 209.472 kb on + strand, within Shewana3_4319 at 209.608 kb on + strand, within Shewana3_4319 at 209.723 kb on - strand, within Shewana3_4319 at 209.764 kb on - strand at 209.767 kb on + strand at 209.898 kb on + strand at 209.905 kb on + strand at 209.918 kb on - strand at 209.925 kb on - strand at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 205,379 + Shewana3_4317 0.20 -1.3 205,521 + Shewana3_4317 0.33 -0.0 205,521 - Shewana3_4317 0.33 +0.2 205,569 + Shewana3_4317 0.38 -0.1 205,569 + Shewana3_4317 0.38 +0.7 205,709 + Shewana3_4317 0.51 -0.3 205,828 - Shewana3_4317 0.62 +0.0 205,831 + Shewana3_4317 0.63 +0.6 205,848 - Shewana3_4317 0.64 -0.3 205,906 - Shewana3_4317 0.70 -0.0 205,916 - Shewana3_4317 0.71 +1.2 205,952 + Shewana3_4317 0.74 -1.6 206,032 - Shewana3_4317 0.82 +0.4 206,134 - +0.8 206,404 + -0.3 206,562 - -0.6 206,562 - -0.5 206,631 + Shewana3_4318 0.10 -0.3 206,636 + Shewana3_4318 0.10 -0.3 206,644 - Shewana3_4318 0.11 +0.0 206,658 + Shewana3_4318 0.11 -1.5 206,659 - Shewana3_4318 0.11 +0.8 206,707 - Shewana3_4318 0.13 +0.4 206,954 - Shewana3_4318 0.21 -0.1 207,013 - Shewana3_4318 0.23 -0.2 207,048 + Shewana3_4318 0.25 -2.4 207,160 + Shewana3_4318 0.28 +0.0 207,238 + Shewana3_4318 0.31 -0.1 207,306 - Shewana3_4318 0.34 +0.1 207,353 - Shewana3_4318 0.35 +2.3 207,353 - Shewana3_4318 0.35 +1.1 207,411 + Shewana3_4318 0.37 +0.1 207,419 - Shewana3_4318 0.37 +7.7 207,436 + Shewana3_4318 0.38 +1.1 207,444 - Shewana3_4318 0.38 -0.3 207,737 - Shewana3_4318 0.48 -0.0 207,795 + Shewana3_4318 0.50 +1.1 207,832 + Shewana3_4318 0.52 -0.3 207,870 - Shewana3_4318 0.53 +0.0 207,876 + Shewana3_4318 0.53 -1.0 207,928 + Shewana3_4318 0.55 +0.2 208,219 + Shewana3_4318 0.65 +0.2 208,466 + Shewana3_4318 0.74 +0.1 208,471 + Shewana3_4318 0.74 -0.0 208,479 - Shewana3_4318 0.74 -0.1 208,507 + Shewana3_4318 0.75 -0.3 208,542 + Shewana3_4318 0.76 -0.0 208,608 + Shewana3_4318 0.78 -0.6 208,608 + Shewana3_4318 0.78 -0.3 208,616 - Shewana3_4318 0.79 -0.2 208,803 + Shewana3_4318 0.85 +0.4 208,977 + -1.6 208,985 - +0.6 209,038 + +0.6 209,163 + -1.7 209,381 + Shewana3_4319 0.26 -0.3 209,472 + Shewana3_4319 0.43 -0.5 209,608 + Shewana3_4319 0.67 -0.0 209,723 - Shewana3_4319 0.87 +5.0 209,764 - +0.0 209,767 + -1.4 209,898 + -1.4 209,905 + +0.5 209,918 - +0.5 209,925 - -0.2 210,099 + Shewana3_4320 0.17 -0.1 210,177 - Shewana3_4320 0.24 +0.4 210,190 + Shewana3_4320 0.25 +0.2
Or see this region's nucleotide sequence