Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4290

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4288 and Shewana3_4289 are separated by 115 nucleotidesShewana3_4289 and Shewana3_4290 are separated by 14 nucleotidesShewana3_4290 and Shewana3_4291 are separated by 75 nucleotidesShewana3_4291 and Shewana3_4292 are separated by 188 nucleotides Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812 _4288 Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350 _4289 Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261 _4290 Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780 _4291 Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514 _4292 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 172.515 kb on - strand, within Shewana3_4288at 172.515 kb on - strand, within Shewana3_4288at 172.620 kb on + strand, within Shewana3_4288at 172.652 kb on + strand, within Shewana3_4288at 172.696 kb on - strand, within Shewana3_4288at 172.832 kb on + strandat 172.832 kb on + strandat 172.832 kb on + strandat 172.840 kb on - strandat 172.840 kb on - strandat 172.966 kb on + strandat 173.007 kb on + strand, within Shewana3_4289at 173.007 kb on + strand, within Shewana3_4289at 173.007 kb on + strand, within Shewana3_4289at 173.010 kb on - strand, within Shewana3_4289at 173.015 kb on - strand, within Shewana3_4289at 173.015 kb on - strand, within Shewana3_4289at 173.015 kb on - strand, within Shewana3_4289at 173.060 kb on - strand, within Shewana3_4289at 173.072 kb on + strand, within Shewana3_4289at 173.122 kb on - strand, within Shewana3_4289at 173.191 kb on - strand, within Shewana3_4289at 173.279 kb on + strand, within Shewana3_4289at 173.327 kb on + strandat 173.417 kb on + strandat 173.463 kb on + strand, within Shewana3_4290at 173.570 kb on - strand, within Shewana3_4290at 173.675 kb on + strand, within Shewana3_4290at 173.763 kb on + strand, within Shewana3_4290at 173.833 kb on - strand, within Shewana3_4290at 173.870 kb on - strand, within Shewana3_4290at 173.976 kb on + strand, within Shewana3_4290at 173.995 kb on + strand, within Shewana3_4290at 174.022 kb on + strand, within Shewana3_4290at 174.030 kb on - strand, within Shewana3_4290at 174.064 kb on - strand, within Shewana3_4290at 174.092 kb on + strand, within Shewana3_4290at 174.141 kb on + strand, within Shewana3_4290at 174.208 kb on - strandat 174.331 kb on + strandat 174.344 kb on - strandat 174.346 kb on + strandat 174.346 kb on + strandat 174.346 kb on + strandat 174.354 kb on - strandat 174.429 kb on + strand, within Shewana3_4291at 174.485 kb on - strand, within Shewana3_4291at 174.540 kb on - strand, within Shewana3_4291at 174.577 kb on + strand, within Shewana3_4291at 174.595 kb on + strand, within Shewana3_4291at 174.595 kb on + strand, within Shewana3_4291at 174.603 kb on - strand, within Shewana3_4291at 174.603 kb on - strand, within Shewana3_4291at 174.665 kb on + strand, within Shewana3_4291at 174.681 kb on + strand, within Shewana3_4291at 174.703 kb on - strand, within Shewana3_4291at 174.719 kb on + strand, within Shewana3_4291at 174.719 kb on + strand, within Shewana3_4291at 174.727 kb on - strand, within Shewana3_4291at 174.781 kb on - strandat 174.858 kb on + strandat 174.876 kb on - strandat 174.931 kb on + strandat 174.985 kb on - strandat 175.005 kb on - strandat 175.025 kb on - strand, within Shewana3_4292at 175.025 kb on - strand, within Shewana3_4292at 175.027 kb on + strand, within Shewana3_4292at 175.115 kb on + strand, within Shewana3_4292at 175.161 kb on - strand, within Shewana3_4292at 175.168 kb on + strandat 175.212 kb on + strand, within Shewana3_4292at 175.230 kb on - strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.252 kb on + strand, within Shewana3_4292at 175.260 kb on - strand, within Shewana3_4292

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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172,515 - Shewana3_4288 0.58 -0.3
172,515 - Shewana3_4288 0.58 +0.7
172,620 + Shewana3_4288 0.73 -1.2
172,652 + Shewana3_4288 0.77 +0.3
172,696 - Shewana3_4288 0.84 -0.9
172,832 + -1.3
172,832 + +0.8
172,832 + +2.6
172,840 - +0.8
172,840 - +3.6
172,966 + +0.1
173,007 + Shewana3_4289 0.19 +0.1
173,007 + Shewana3_4289 0.19 -0.3
173,007 + Shewana3_4289 0.19 +0.1
173,010 - Shewana3_4289 0.19 +2.0
173,015 - Shewana3_4289 0.21 -0.5
173,015 - Shewana3_4289 0.21 +1.4
173,015 - Shewana3_4289 0.21 +0.4
173,060 - Shewana3_4289 0.31 +2.0
173,072 + Shewana3_4289 0.34 -1.0
173,122 - Shewana3_4289 0.46 +0.8
173,191 - Shewana3_4289 0.62 +2.6
173,279 + Shewana3_4289 0.83 +0.3
173,327 + +0.1
173,417 + -1.2
173,463 + Shewana3_4290 0.11 -1.7
173,570 - Shewana3_4290 0.23 -1.3
173,675 + Shewana3_4290 0.35 +0.0
173,763 + Shewana3_4290 0.44 -0.3
173,833 - Shewana3_4290 0.52 +2.6
173,870 - Shewana3_4290 0.56 +2.6
173,976 + Shewana3_4290 0.68 +0.3
173,995 + Shewana3_4290 0.70 +6.4
174,022 + Shewana3_4290 0.73 -0.1
174,030 - Shewana3_4290 0.74 +3.6
174,064 - Shewana3_4290 0.78 +0.4
174,092 + Shewana3_4290 0.81 +1.8
174,141 + Shewana3_4290 0.87 -0.8
174,208 - +3.6
174,331 + -0.5
174,344 - +1.6
174,346 + +0.6
174,346 + +0.2
174,346 + +0.2
174,354 - +0.8
174,429 + Shewana3_4291 0.21 +1.6
174,485 - Shewana3_4291 0.33 -0.0
174,540 - Shewana3_4291 0.46 -0.6
174,577 + Shewana3_4291 0.54 +0.1
174,595 + Shewana3_4291 0.58 -1.4
174,595 + Shewana3_4291 0.58 +0.4
174,603 - Shewana3_4291 0.60 +2.0
174,603 - Shewana3_4291 0.60 +1.2
174,665 + Shewana3_4291 0.74 -1.1
174,681 + Shewana3_4291 0.77 -0.4
174,703 - Shewana3_4291 0.82 -0.3
174,719 + Shewana3_4291 0.86 -1.8
174,719 + Shewana3_4291 0.86 +0.7
174,727 - Shewana3_4291 0.88 -0.4
174,781 - +1.2
174,858 + +0.6
174,876 - +1.6
174,931 + +1.2
174,985 - +1.1
175,005 - -0.1
175,025 - Shewana3_4292 0.10 -0.1
175,025 - Shewana3_4292 0.10 +0.2
175,027 + Shewana3_4292 0.11 +2.0
175,115 + Shewana3_4292 0.27 +0.2
175,161 - Shewana3_4292 0.35 -1.6
175,168 + +2.0
175,212 + Shewana3_4292 0.45 +4.0
175,230 - Shewana3_4292 0.48 -0.0
175,252 + Shewana3_4292 0.52 +0.4
175,252 + Shewana3_4292 0.52 +0.6
175,252 + Shewana3_4292 0.52 +1.2
175,252 + Shewana3_4292 0.52 -0.8
175,260 - Shewana3_4292 0.53 -0.5

Or see this region's nucleotide sequence