Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4184 and Shewana3_4185 are separated by 152 nucleotides Shewana3_4185 and Shewana3_4186 are separated by 2 nucleotides Shewana3_4186 and Shewana3_4187 are separated by 104 nucleotides
Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745
_4184
Shewana3_4185: Shewana3_4185 - hypothetical protein (RefSeq), at 50,898 to 51,413
_4185
Shewana3_4186: Shewana3_4186 - membrane-bound metal-dependent hydrolase (RefSeq), at 51,416 to 51,769
_4186
Shewana3_4187: Shewana3_4187 - hypothetical protein (RefSeq), at 51,874 to 52,488
_4187
Position (kb) 51
52 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 50.708 kb on - strand at 50.966 kb on + strand, within Shewana3_4185 at 51.181 kb on + strand, within Shewana3_4185 at 51.286 kb on - strand, within Shewana3_4185 at 51.406 kb on - strand at 51.489 kb on + strand, within Shewana3_4186 at 51.545 kb on - strand, within Shewana3_4186 at 51.633 kb on + strand, within Shewana3_4186 at 51.855 kb on - strand at 52.172 kb on - strand, within Shewana3_4187 at 52.304 kb on - strand, within Shewana3_4187 at 52.306 kb on + strand, within Shewana3_4187 at 52.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 50,708 - +0.1 50,966 + Shewana3_4185 0.13 +2.2 51,181 + Shewana3_4185 0.55 +1.2 51,286 - Shewana3_4185 0.75 +3.1 51,406 - +1.6 51,489 + Shewana3_4186 0.21 +2.3 51,545 - Shewana3_4186 0.36 +3.0 51,633 + Shewana3_4186 0.61 +2.1 51,855 - +3.2 52,172 - Shewana3_4187 0.48 +3.5 52,304 - Shewana3_4187 0.70 +3.1 52,306 + Shewana3_4187 0.70 +2.1 52,529 + +5.3
Or see this region's nucleotide sequence