Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4160 and Shewana3_4161 overlap by 4 nucleotides Shewana3_4161 and Shewana3_4162 are separated by 7 nucleotides Shewana3_4162 and Shewana3_4163 are separated by 1 nucleotides
Shewana3_4160: Shewana3_4160 - S-adenosylhomocysteine hydrolase (RefSeq), at 21,935 to 22,345
_4160
Shewana3_4161: Shewana3_4161 - hypothetical protein (RefSeq), at 22,342 to 23,283
_4161
Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915
_4162
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 22.613 kb on - strand, within Shewana3_4161 at 22.766 kb on + strand, within Shewana3_4161 at 22.836 kb on + strand, within Shewana3_4161 at 22.848 kb on + strand, within Shewana3_4161 at 22.915 kb on + strand, within Shewana3_4161 at 23.000 kb on + strand, within Shewana3_4161 at 23.456 kb on - strand at 23.458 kb on + strand at 23.458 kb on - strand at 23.492 kb on + strand at 23.571 kb on + strand, within Shewana3_4162 at 23.848 kb on + strand, within Shewana3_4162 at 24.053 kb on - strand, within Shewana3_4162 at 24.120 kb on - strand, within Shewana3_4162 at 24.165 kb on + strand, within Shewana3_4162 at 24.206 kb on - strand, within Shewana3_4162 at 24.242 kb on - strand, within Shewana3_4162 at 24.323 kb on - strand, within Shewana3_4162 at 24.373 kb on + strand, within Shewana3_4162 at 24.381 kb on - strand, within Shewana3_4162 at 24.601 kb on - strand, within Shewana3_4162 at 24.847 kb on + strand, within Shewana3_4162 at 24.875 kb on + strand, within Shewana3_4162 at 25.016 kb on + strand, within Shewana3_4162 at 25.082 kb on + strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.100 kb on - strand, within Shewana3_4162 at 25.137 kb on + strand, within Shewana3_4162 at 25.178 kb on + strand, within Shewana3_4162 at 25.202 kb on - strand, within Shewana3_4162 at 25.285 kb on - strand, within Shewana3_4162 at 25.412 kb on + strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.543 kb on - strand, within Shewana3_4162 at 25.864 kb on - strand at 25.886 kb on - strand at 25.900 kb on + strand at 25.908 kb on - strand at 25.966 kb on - strand at 25.966 kb on - strand at 26.126 kb on + strand, within Shewana3_4163 at 26.134 kb on - strand, within Shewana3_4163 at 26.278 kb on + strand, within Shewana3_4163 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 22,613 - Shewana3_4161 0.29 +0.1 22,766 + Shewana3_4161 0.45 -0.3 22,836 + Shewana3_4161 0.52 -0.6 22,848 + Shewana3_4161 0.54 -0.8 22,915 + Shewana3_4161 0.61 -0.4 23,000 + Shewana3_4161 0.70 -1.1 23,456 - -0.5 23,458 + +1.9 23,458 - -1.2 23,492 + -1.7 23,571 + Shewana3_4162 0.11 +2.0 23,848 + Shewana3_4162 0.21 -1.5 24,053 - Shewana3_4162 0.29 -0.4 24,120 - Shewana3_4162 0.32 +0.4 24,165 + Shewana3_4162 0.33 +0.2 24,206 - Shewana3_4162 0.35 +1.2 24,242 - Shewana3_4162 0.36 -2.2 24,323 - Shewana3_4162 0.39 +0.4 24,373 + Shewana3_4162 0.41 -1.2 24,381 - Shewana3_4162 0.42 -1.7 24,601 - Shewana3_4162 0.50 -0.9 24,847 + Shewana3_4162 0.59 -1.6 24,875 + Shewana3_4162 0.60 +0.8 25,016 + Shewana3_4162 0.66 +2.0 25,082 + Shewana3_4162 0.68 +2.1 25,090 - Shewana3_4162 0.69 -0.5 25,090 - Shewana3_4162 0.69 -0.0 25,100 - Shewana3_4162 0.69 +0.2 25,137 + Shewana3_4162 0.70 -0.8 25,178 + Shewana3_4162 0.72 -1.4 25,202 - Shewana3_4162 0.73 -1.6 25,285 - Shewana3_4162 0.76 +2.0 25,412 + Shewana3_4162 0.81 -1.3 25,420 - Shewana3_4162 0.81 -1.3 25,420 - Shewana3_4162 0.81 -0.0 25,420 - Shewana3_4162 0.81 -0.1 25,420 - Shewana3_4162 0.81 +2.0 25,543 - Shewana3_4162 0.86 +3.6 25,864 - -0.1 25,886 - +1.6 25,900 + -0.4 25,908 - +1.6 25,966 - +3.6 25,966 - +0.8 26,126 + Shewana3_4163 0.17 -2.8 26,134 - Shewana3_4163 0.18 +1.3 26,278 + Shewana3_4163 0.30 +0.2 26,566 - Shewana3_4163 0.53 +1.0 26,583 + Shewana3_4163 0.55 -1.1 26,590 + Shewana3_4163 0.55 +0.5 26,590 + Shewana3_4163 0.55 -0.9 26,598 - Shewana3_4163 0.56 +0.6 26,598 - Shewana3_4163 0.56 +1.2 26,632 - Shewana3_4163 0.59 +0.6 26,802 + Shewana3_4163 0.73 -2.0 26,802 + Shewana3_4163 0.73 +0.9
Or see this region's nucleotide sequence