Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3607 and Shew_3608 overlap by 1 nucleotides Shew_3608 and Shew_3609 are separated by 78 nucleotides Shew_3609 and Shew_3610 are separated by 20 nucleotides Shew_3610 and Shew_3611 are separated by 1 nucleotides
Shew_3607: Shew_3607 - putative methyltransferase (RefSeq), at 4,306,297 to 4,306,884
_3607
Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174
_3608
Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014
_3609
Shew_3610: Shew_3610 - general secretion pathway M protein (RefSeq), at 4,308,035 to 4,308,511
_3610
Shew_3611: Shew_3611 - general secretion pathway protein L (RefSeq), at 4,308,513 to 4,309,703
_3611
Position (kb) 4307
4308
4309 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4306.326 kb on + strand at 4306.501 kb on - strand, within Shew_3607 at 4306.616 kb on - strand, within Shew_3607 at 4306.617 kb on - strand, within Shew_3607 at 4306.632 kb on + strand, within Shew_3607 at 4306.699 kb on + strand, within Shew_3607 at 4306.704 kb on + strand, within Shew_3607 at 4306.755 kb on + strand, within Shew_3607 at 4306.868 kb on - strand at 4307.094 kb on + strand, within Shew_3608 at 4307.322 kb on + strand at 4307.398 kb on + strand, within Shew_3609 at 4307.431 kb on - strand, within Shew_3609 at 4307.849 kb on + strand, within Shew_3609 at 4308.071 kb on + strand at 4308.206 kb on - strand, within Shew_3610 at 4308.350 kb on + strand, within Shew_3610 at 4308.475 kb on + strand at 4308.495 kb on + strand at 4308.530 kb on - strand at 4308.829 kb on + strand, within Shew_3611 at 4308.836 kb on - strand, within Shew_3611
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 4,306,326 + -0.8 4,306,501 - Shew_3607 0.35 -1.0 4,306,616 - Shew_3607 0.54 -1.3 4,306,617 - Shew_3607 0.54 -1.9 4,306,632 + Shew_3607 0.57 -1.2 4,306,699 + Shew_3607 0.68 -2.1 4,306,704 + Shew_3607 0.69 -1.0 4,306,755 + Shew_3607 0.78 -1.0 4,306,868 - -0.1 4,307,094 + Shew_3608 0.72 +0.5 4,307,322 + -1.1 4,307,398 + Shew_3609 0.19 -1.1 4,307,431 - Shew_3609 0.23 -1.0 4,307,849 + Shew_3609 0.78 -2.2 4,308,071 + -1.6 4,308,206 - Shew_3610 0.36 -2.4 4,308,350 + Shew_3610 0.66 -0.1 4,308,475 + -3.4 4,308,495 + -2.6 4,308,530 - -1.5 4,308,829 + Shew_3611 0.27 -0.1 4,308,836 - Shew_3611 0.27 -1.1
Or see this region's nucleotide sequence