Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3588 and Shew_3589 are separated by 110 nucleotides Shew_3589 and Shew_3590 are separated by 141 nucleotides Shew_3590 and Shew_3591 overlap by 11 nucleotides
Shew_3588: Shew_3588 - Bcr/CflA subfamily drug resistance transporter (RefSeq), at 4,285,833 to 4,287,035
_3588
Shew_3589: Shew_3589 - LysR family transcriptional regulator (RefSeq), at 4,287,146 to 4,288,138
_3589
Shew_3590: Shew_3590 - hypothetical protein (RefSeq), at 4,288,280 to 4,288,630
_3590
Shew_3591: Shew_3591 - hypothetical protein (RefSeq), at 4,288,620 to 4,289,939
_3591
Position (kb) 4287
4288
4289 Strain fitness (log2 ratio) -2
-1
0
1 at 4286.152 kb on + strand, within Shew_3588 at 4287.178 kb on + strand at 4287.864 kb on - strand, within Shew_3589 at 4287.964 kb on - strand, within Shew_3589 at 4288.003 kb on + strand, within Shew_3589 at 4288.015 kb on + strand, within Shew_3589 at 4288.023 kb on - strand, within Shew_3589 at 4288.072 kb on + strand at 4288.092 kb on - strand at 4288.592 kb on + strand, within Shew_3590 at 4288.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 4,286,152 + Shew_3588 0.27 -2.1 4,287,178 + -0.2 4,287,864 - Shew_3589 0.72 +0.5 4,287,964 - Shew_3589 0.82 +0.1 4,288,003 + Shew_3589 0.86 -0.2 4,288,015 + Shew_3589 0.88 +0.5 4,288,023 - Shew_3589 0.88 +0.1 4,288,072 + +0.9 4,288,092 - +0.5 4,288,592 + Shew_3590 0.89 +1.2 4,288,681 - +0.6
Or see this region's nucleotide sequence