Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3516 and Shew_3517 are separated by 0 nucleotides Shew_3517 and Shew_3518 are separated by 10 nucleotides Shew_3518 and Shew_3519 overlap by 4 nucleotides
Shew_3516: Shew_3516 - glycosyl transferase family protein (RefSeq), at 4,201,430 to 4,203,148
_3516
Shew_3517: Shew_3517 - histidine ammonia-lyase (RefSeq), at 4,203,149 to 4,204,711
_3517
Shew_3518: Shew_3518 - thioesterase superfamily protein (RefSeq), at 4,204,722 to 4,205,156
_3518
Shew_3519: Shew_3519 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 4,205,153 to 4,205,926
_3519
Position (kb) 4203
4204
4205 Strain fitness (log2 ratio) -1
0
1 at 4202.179 kb on - strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.406 kb on + strand, within Shew_3516 at 4202.507 kb on + strand, within Shew_3516 at 4202.577 kb on - strand, within Shew_3516 at 4202.671 kb on + strand, within Shew_3516 at 4202.677 kb on + strand, within Shew_3516 at 4202.695 kb on - strand, within Shew_3516 at 4202.727 kb on + strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.766 kb on - strand, within Shew_3516 at 4203.071 kb on - strand at 4203.469 kb on + strand, within Shew_3517 at 4203.469 kb on + strand, within Shew_3517 at 4203.511 kb on + strand, within Shew_3517 at 4203.688 kb on - strand, within Shew_3517 at 4203.696 kb on + strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517 at 4204.231 kb on - strand, within Shew_3517 at 4204.862 kb on - strand, within Shew_3518 at 4204.885 kb on - strand, within Shew_3518 at 4204.931 kb on - strand, within Shew_3518
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 4,202,179 - Shew_3516 0.44 +0.9 4,202,235 + Shew_3516 0.47 -0.3 4,202,235 + Shew_3516 0.47 +0.3 4,202,243 - Shew_3516 0.47 -0.6 4,202,243 - Shew_3516 0.47 +1.4 4,202,406 + Shew_3516 0.57 +0.4 4,202,507 + Shew_3516 0.63 +0.4 4,202,577 - Shew_3516 0.67 +0.6 4,202,671 + Shew_3516 0.72 +0.5 4,202,677 + Shew_3516 0.73 +0.3 4,202,695 - Shew_3516 0.74 +0.7 4,202,727 + Shew_3516 0.75 +0.5 4,202,735 - Shew_3516 0.76 +0.5 4,202,735 - Shew_3516 0.76 -0.8 4,202,766 - Shew_3516 0.78 +1.4 4,203,071 - +0.6 4,203,469 + Shew_3517 0.20 +0.5 4,203,469 + Shew_3517 0.20 +1.2 4,203,511 + Shew_3517 0.23 +0.7 4,203,688 - Shew_3517 0.34 +0.6 4,203,696 + Shew_3517 0.35 +1.0 4,203,806 - Shew_3517 0.42 +1.5 4,203,806 - Shew_3517 0.42 +0.6 4,204,231 - Shew_3517 0.69 +0.2 4,204,862 - Shew_3518 0.32 +0.7 4,204,885 - Shew_3518 0.37 +0.7 4,204,931 - Shew_3518 0.48 -0.1
Or see this region's nucleotide sequence