Strain Fitness in Shewanella loihica PV-4 around Shew_2905

Experiment: nitrate 2000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2904 and Shew_2905 are separated by 62 nucleotidesShew_2905 and Shew_2906 are separated by 126 nucleotidesShew_2906 and Shew_2907 overlap by 1 nucleotides Shew_2904: Shew_2904 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 3,443,653 to 3,444,501 _2904 Shew_2905: Shew_2905 - hypothetical protein (RefSeq), at 3,444,564 to 3,445,841 _2905 Shew_2906: Shew_2906 - hypothetical protein (RefSeq), at 3,445,968 to 3,446,756 _2906 Shew_2907: Shew_2907 - invasion gene expression up-regulator, SirB (RefSeq), at 3,446,756 to 3,447,142 _2907 Position (kb) 3444 3445 3446Strain fitness (log2 ratio) -3 -2 -1 0 1at 3445.417 kb on - strand, within Shew_2905at 3445.484 kb on - strand, within Shew_2905at 3446.396 kb on + strand, within Shew_2906at 3446.404 kb on - strand, within Shew_2906

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 2000 mM
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3,445,417 - Shew_2905 0.67 -1.2
3,445,484 - Shew_2905 0.72 -0.2
3,446,396 + Shew_2906 0.54 -0.7
3,446,404 - Shew_2906 0.55 -3.0

Or see this region's nucleotide sequence