Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1741 and Shew_1742 are separated by 40 nucleotides Shew_1742 and Shew_1743 are separated by 76 nucleotides Shew_1743 and Shew_1744 are separated by 247 nucleotides
Shew_1741: Shew_1741 - beta-lactamase domain-containing protein (RefSeq), at 1,991,469 to 1,992,200
_1741
Shew_1742: Shew_1742 - methyl-accepting chemotaxis protein (RefSeq), at 1,992,241 to 1,992,858
_1742
Shew_1743: Shew_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,992,935 to 1,993,438
_1743
Shew_1744: Shew_1744 - GCN5-related N-acetyltransferase (RefSeq), at 1,993,686 to 1,994,291
_1744
Position (kb) 1992
1993 Strain fitness (log2 ratio) -1
0
1 at 1991.908 kb on + strand, within Shew_1741 at 1991.920 kb on + strand, within Shew_1741 at 1991.928 kb on - strand, within Shew_1741 at 1992.058 kb on - strand, within Shew_1741 at 1992.611 kb on + strand, within Shew_1742 at 1992.993 kb on + strand, within Shew_1743 at 1993.059 kb on + strand, within Shew_1743 at 1993.067 kb on - strand, within Shew_1743 at 1993.856 kb on + strand, within Shew_1744
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 1,991,908 + Shew_1741 0.60 +0.4 1,991,920 + Shew_1741 0.62 +0.0 1,991,928 - Shew_1741 0.63 -0.2 1,992,058 - Shew_1741 0.80 +1.4 1,992,611 + Shew_1742 0.60 +0.7 1,992,993 + Shew_1743 0.12 +0.9 1,993,059 + Shew_1743 0.25 -0.2 1,993,067 - Shew_1743 0.26 +0.1 1,993,856 + Shew_1744 0.28 -0.1
Or see this region's nucleotide sequence