Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1516 and Shew_1517 are separated by 135 nucleotides Shew_1517 and Shew_1518 are separated by 281 nucleotides Shew_1518 and Shew_1519 are separated by 151 nucleotides
Shew_1516: Shew_1516 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,739,339 to 1,739,944
_1516
Shew_1517: Shew_1517 - putative adenylyl cyclase CyaB (RefSeq), at 1,740,080 to 1,740,661
_1517
Shew_1518: Shew_1518 - hypothetical protein (RefSeq), at 1,740,943 to 1,741,689
_1518
Shew_1519: Shew_1519 - hypothetical protein (RefSeq), at 1,741,841 to 1,742,857
_1519
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -1
0
1 at 1740.325 kb on + strand, within Shew_1517 at 1740.421 kb on - strand, within Shew_1517 at 1740.421 kb on - strand, within Shew_1517 at 1740.612 kb on + strand at 1740.839 kb on + strand at 1741.011 kb on + strand at 1741.595 kb on - strand, within Shew_1518 at 1741.613 kb on + strand, within Shew_1518 at 1742.196 kb on - strand, within Shew_1519 at 1742.511 kb on - strand, within Shew_1519 at 1742.543 kb on - strand, within Shew_1519
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 1,740,325 + Shew_1517 0.42 -0.3 1,740,421 - Shew_1517 0.59 -0.8 1,740,421 - Shew_1517 0.59 +0.6 1,740,612 + -0.2 1,740,839 + +0.8 1,741,011 + +0.8 1,741,595 - Shew_1518 0.87 +1.4 1,741,613 + Shew_1518 0.90 -0.7 1,742,196 - Shew_1519 0.35 +0.4 1,742,511 - Shew_1519 0.66 +0.2 1,742,543 - Shew_1519 0.69 +0.1
Or see this region's nucleotide sequence