Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1496 and Shew_1497 are separated by 195 nucleotides Shew_1497 and Shew_1498 overlap by 1 nucleotides Shew_1498 and Shew_1499 overlap by 11 nucleotides Shew_1499 and Shew_1500 overlap by 4 nucleotides Shew_1500 and Shew_1501 are separated by 84 nucleotides
Shew_1496: Shew_1496 - putative lipoprotein (RefSeq), at 1,718,829 to 1,719,362
_1496
Shew_1497: Shew_1497 - hypothetical protein (RefSeq), at 1,719,558 to 1,720,292
_1497
Shew_1498: Shew_1498 - hypothetical protein (RefSeq), at 1,720,292 to 1,721,080
_1498
Shew_1499: Shew_1499 - putative nitrogen regulatory protein P-II (RefSeq), at 1,721,070 to 1,721,420
_1499
Shew_1500: Shew_1500 - signal transduction protein (RefSeq), at 1,721,417 to 1,721,821
_1500
Shew_1501: Shew_1501 - glutaredoxin (RefSeq), at 1,721,906 to 1,722,262
_1501
Position (kb) 1720
1721
1722 Strain fitness (log2 ratio) -1
0
1 at 1719.412 kb on - strand at 1719.507 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1720.030 kb on - strand, within Shew_1497 at 1720.165 kb on - strand, within Shew_1497 at 1720.276 kb on - strand at 1720.457 kb on - strand, within Shew_1498 at 1720.509 kb on - strand, within Shew_1498 at 1720.586 kb on + strand, within Shew_1498 at 1720.734 kb on + strand, within Shew_1498 at 1720.739 kb on + strand, within Shew_1498 at 1720.822 kb on - strand, within Shew_1498 at 1721.115 kb on - strand, within Shew_1499 at 1721.587 kb on - strand, within Shew_1500 at 1721.721 kb on - strand, within Shew_1500
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 1,719,412 - +0.3 1,719,507 + -0.0 1,719,542 + +1.1 1,719,542 + +0.9 1,719,542 + +0.8 1,719,542 + +0.2 1,720,030 - Shew_1497 0.64 +0.6 1,720,165 - Shew_1497 0.83 -0.8 1,720,276 - -1.7 1,720,457 - Shew_1498 0.21 +1.3 1,720,509 - Shew_1498 0.28 +1.3 1,720,586 + Shew_1498 0.37 +0.4 1,720,734 + Shew_1498 0.56 +0.3 1,720,739 + Shew_1498 0.57 +0.9 1,720,822 - Shew_1498 0.67 +1.3 1,721,115 - Shew_1499 0.13 +0.5 1,721,587 - Shew_1500 0.42 +1.2 1,721,721 - Shew_1500 0.75 -0.0
Or see this region's nucleotide sequence