Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0780 and Shew_0781 are separated by 119 nucleotides Shew_0781 and Shew_0782 are separated by 220 nucleotides Shew_0782 and Shew_0783 are separated by 134 nucleotides
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Shew_0782: Shew_0782 - DNA-binding transcriptional regulator AsnC (RefSeq), at 896,794 to 897,255
_0782
Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067
_0783
Position (kb) 892
893
894
895
896
897 Strain fitness (log2 ratio) -2
-1
0
1 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780 at 892.876 kb on - strand at 892.886 kb on - strand at 893.009 kb on + strand at 893.060 kb on + strand at 893.140 kb on - strand, within Shew_0781 at 893.256 kb on - strand, within Shew_0781 at 893.461 kb on - strand, within Shew_0781 at 893.471 kb on - strand, within Shew_0781 at 893.683 kb on + strand, within Shew_0781 at 893.806 kb on + strand, within Shew_0781 at 893.806 kb on + strand, within Shew_0781 at 893.814 kb on - strand, within Shew_0781 at 893.852 kb on - strand, within Shew_0781 at 894.072 kb on - strand, within Shew_0781 at 894.143 kb on - strand, within Shew_0781 at 894.508 kb on - strand, within Shew_0781 at 894.508 kb on - strand, within Shew_0781 at 894.558 kb on - strand, within Shew_0781 at 894.607 kb on + strand, within Shew_0781 at 894.624 kb on + strand, within Shew_0781 at 894.624 kb on + strand, within Shew_0781 at 894.776 kb on + strand, within Shew_0781 at 894.812 kb on + strand, within Shew_0781 at 894.887 kb on + strand, within Shew_0781 at 894.895 kb on - strand, within Shew_0781 at 895.043 kb on - strand, within Shew_0781 at 895.145 kb on - strand, within Shew_0781 at 895.305 kb on - strand, within Shew_0781 at 895.349 kb on - strand, within Shew_0781 at 895.531 kb on + strand, within Shew_0781 at 895.592 kb on + strand, within Shew_0781 at 895.633 kb on + strand, within Shew_0781 at 895.769 kb on + strand, within Shew_0781 at 895.804 kb on + strand, within Shew_0781 at 895.853 kb on + strand, within Shew_0781 at 896.086 kb on - strand, within Shew_0781 at 896.151 kb on - strand, within Shew_0781 at 896.168 kb on - strand, within Shew_0781 at 896.219 kb on - strand at 896.504 kb on + strand at 896.800 kb on - strand at 896.973 kb on + strand, within Shew_0782 at 897.066 kb on + strand, within Shew_0782 at 897.073 kb on - strand, within Shew_0782 at 897.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 891,965 + Shew_0780 0.42 +0.2 892,016 + Shew_0780 0.47 +0.4 892,038 + Shew_0780 0.49 +0.1 892,046 - Shew_0780 0.50 -1.3 892,084 - Shew_0780 0.53 +0.4 892,089 - Shew_0780 0.54 +0.0 892,167 - Shew_0780 0.61 -1.0 892,233 + Shew_0780 0.67 +0.0 892,233 + Shew_0780 0.67 -0.6 892,381 + Shew_0780 0.80 +0.3 892,876 - +0.3 892,886 - +0.3 893,009 + -0.1 893,060 + +1.5 893,140 - Shew_0781 0.11 +0.4 893,256 - Shew_0781 0.14 -0.1 893,461 - Shew_0781 0.19 -0.5 893,471 - Shew_0781 0.19 -0.2 893,683 + Shew_0781 0.25 +0.8 893,806 + Shew_0781 0.28 -0.1 893,806 + Shew_0781 0.28 +1.6 893,814 - Shew_0781 0.28 -0.7 893,852 - Shew_0781 0.29 +0.2 894,072 - Shew_0781 0.35 -0.1 894,143 - Shew_0781 0.37 -0.6 894,508 - Shew_0781 0.46 +0.2 894,508 - Shew_0781 0.46 +0.3 894,558 - Shew_0781 0.48 -1.3 894,607 + Shew_0781 0.49 -0.1 894,624 + Shew_0781 0.49 +0.3 894,624 + Shew_0781 0.49 +0.1 894,776 + Shew_0781 0.53 -0.2 894,812 + Shew_0781 0.54 -0.7 894,887 + Shew_0781 0.56 -0.1 894,895 - Shew_0781 0.56 +0.0 895,043 - Shew_0781 0.60 +0.6 895,145 - Shew_0781 0.63 +0.3 895,305 - Shew_0781 0.67 -0.4 895,349 - Shew_0781 0.68 -0.4 895,531 + Shew_0781 0.73 -0.0 895,592 + Shew_0781 0.75 +1.1 895,633 + Shew_0781 0.76 +0.1 895,769 + Shew_0781 0.79 -0.8 895,804 + Shew_0781 0.80 +0.3 895,853 + Shew_0781 0.81 +0.2 896,086 - Shew_0781 0.87 +0.4 896,151 - Shew_0781 0.89 -0.3 896,168 - Shew_0781 0.89 -0.1 896,219 - -0.0 896,504 + +0.1 896,800 - -1.8 896,973 + Shew_0782 0.39 +1.1 897,066 + Shew_0782 0.59 -0.1 897,073 - Shew_0782 0.60 +0.7 897,398 - +0.2
Or see this region's nucleotide sequence