Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and Shew_0574 are separated by 1 nucleotides Shew_0574 and Shew_0575 are separated by 205 nucleotides Shew_0575 and Shew_0576 are separated by 170 nucleotides
Shew_0573: sspA - stringent starvation protein A (RefSeq), at 648,785 to 649,414
sspA
Shew_0574: Shew_0574 - ClpXP protease specificity-enhancing factor (RefSeq), at 649,416 to 649,874
_0574
Shew_0575: Shew_0575 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 650,080 to 650,667
_0575
Shew_0576: Shew_0576 - peptidase S9 prolyl oligopeptidase (RefSeq), at 650,838 to 653,324
_0576
Position (kb) 650
651 Strain fitness (log2 ratio) -1
0
1 at 649.945 kb on - strand at 650.553 kb on - strand, within Shew_0575 at 650.615 kb on + strand at 651.189 kb on + strand, within Shew_0576 at 651.272 kb on - strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.576 kb on + strand, within Shew_0576 at 651.599 kb on + strand, within Shew_0576
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 649,945 - +0.8 650,553 - Shew_0575 0.80 -0.7 650,615 + -0.2 651,189 + Shew_0576 0.14 +0.3 651,272 - Shew_0576 0.17 +0.8 651,434 + Shew_0576 0.24 +0.1 651,434 + Shew_0576 0.24 -0.8 651,434 + Shew_0576 0.24 +0.6 651,576 + Shew_0576 0.30 +1.4 651,599 + Shew_0576 0.31 +0.5
Or see this region's nucleotide sequence