Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0527 and Shew_0528 are separated by 94 nucleotides Shew_0528 and Shew_0529 are separated by 79 nucleotides Shew_0529 and Shew_0530 are separated by 233 nucleotides
Shew_0527: Shew_0527 - Sel1 domain-containing protein (RefSeq), at 596,449 to 597,303
_0527
Shew_0528: Shew_0528 - Sel1 domain-containing protein (RefSeq), at 597,398 to 598,222
_0528
Shew_0529: Shew_0529 - Sel1 domain-containing protein (RefSeq), at 598,302 to 599,129
_0529
Shew_0530: Shew_0530 - FAD dependent oxidoreductase (RefSeq), at 599,363 to 600,490
_0530
Position (kb) 598
599
600 Strain fitness (log2 ratio) -1
0
1 at 597.444 kb on - strand at 597.450 kb on - strand at 597.887 kb on - strand, within Shew_0528 at 597.945 kb on + strand, within Shew_0528 at 597.953 kb on - strand, within Shew_0528 at 597.992 kb on - strand, within Shew_0528 at 598.180 kb on + strand at 598.698 kb on - strand, within Shew_0529 at 599.062 kb on + strand at 599.219 kb on + strand at 599.308 kb on + strand at 599.491 kb on - strand, within Shew_0530 at 599.562 kb on - strand, within Shew_0530 at 599.566 kb on + strand, within Shew_0530 at 599.819 kb on - strand, within Shew_0530 at 599.993 kb on - strand, within Shew_0530 at 600.012 kb on + strand, within Shew_0530
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 597,444 - +0.5 597,450 - -0.2 597,887 - Shew_0528 0.59 +1.4 597,945 + Shew_0528 0.66 -0.0 597,953 - Shew_0528 0.67 -0.3 597,992 - Shew_0528 0.72 -0.6 598,180 + +0.1 598,698 - Shew_0529 0.48 -0.6 599,062 + -0.2 599,219 + -0.2 599,308 + +0.1 599,491 - Shew_0530 0.11 +0.3 599,562 - Shew_0530 0.18 +0.1 599,566 + Shew_0530 0.18 +0.1 599,819 - Shew_0530 0.40 +0.2 599,993 - Shew_0530 0.56 -1.2 600,012 + Shew_0530 0.58 +0.2
Or see this region's nucleotide sequence