Strain Fitness in Shewanella loihica PV-4 around Shew_0476

Experiment: nitrate 2000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0475 and Shew_0476 are separated by 216 nucleotidesShew_0476 and Shew_0477 are separated by 31 nucleotides Shew_0475: Shew_0475 - hypothetical protein (RefSeq), at 532,487 to 533,653 _0475 Shew_0476: Shew_0476 - hypothetical protein (RefSeq), at 533,870 to 534,667 _0476 Shew_0477: Shew_0477 - hypothetical protein (RefSeq), at 534,699 to 535,280 _0477 Position (kb) 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2at 532.877 kb on + strand, within Shew_0475at 532.877 kb on + strand, within Shew_0475at 532.885 kb on - strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.887 kb on + strand, within Shew_0475at 532.895 kb on - strand, within Shew_0475at 532.895 kb on - strand, within Shew_0475at 532.895 kb on - strand, within Shew_0475at 532.895 kb on - strand, within Shew_0475at 532.897 kb on + strand, within Shew_0475at 532.897 kb on + strand, within Shew_0475at 532.902 kb on + strand, within Shew_0475at 532.905 kb on - strand, within Shew_0475at 532.905 kb on - strand, within Shew_0475at 532.905 kb on - strand, within Shew_0475at 532.905 kb on - strand, within Shew_0475at 532.911 kb on + strand, within Shew_0475at 532.911 kb on + strand, within Shew_0475at 532.911 kb on + strand, within Shew_0475at 532.912 kb on + strand, within Shew_0475at 532.912 kb on + strand, within Shew_0475at 532.919 kb on - strand, within Shew_0475at 532.919 kb on - strand, within Shew_0475at 532.919 kb on - strand, within Shew_0475at 532.919 kb on - strand, within Shew_0475at 532.920 kb on - strand, within Shew_0475at 532.920 kb on - strand, within Shew_0475at 532.920 kb on - strand, within Shew_0475at 532.920 kb on - strand, within Shew_0475at 532.924 kb on - strand, within Shew_0475at 532.944 kb on + strand, within Shew_0475at 532.986 kb on - strand, within Shew_0475at 532.988 kb on - strand, within Shew_0475at 533.000 kb on + strand, within Shew_0475at 533.000 kb on + strand, within Shew_0475at 533.008 kb on - strand, within Shew_0475at 533.012 kb on + strand, within Shew_0475at 533.012 kb on + strand, within Shew_0475at 533.012 kb on + strand, within Shew_0475at 533.012 kb on + strand, within Shew_0475at 533.020 kb on - strand, within Shew_0475at 533.020 kb on - strand, within Shew_0475at 533.020 kb on - strand, within Shew_0475at 533.020 kb on - strand, within Shew_0475at 533.020 kb on - strand, within Shew_0475at 533.021 kb on - strand, within Shew_0475at 533.024 kb on + strand, within Shew_0475at 533.036 kb on - strand, within Shew_0475at 533.047 kb on + strand, within Shew_0475at 533.058 kb on + strand, within Shew_0475at 533.101 kb on + strand, within Shew_0475at 533.104 kb on - strand, within Shew_0475at 533.109 kb on - strand, within Shew_0475at 533.112 kb on + strand, within Shew_0475at 533.139 kb on + strand, within Shew_0475at 533.165 kb on + strand, within Shew_0475at 533.222 kb on - strand, within Shew_0475at 533.235 kb on + strand, within Shew_0475at 533.235 kb on + strand, within Shew_0475at 533.243 kb on - strand, within Shew_0475at 533.244 kb on - strand, within Shew_0475at 533.376 kb on + strand, within Shew_0475at 533.376 kb on + strand, within Shew_0475at 533.381 kb on - strand, within Shew_0475at 533.392 kb on + strand, within Shew_0475at 533.456 kb on + strand, within Shew_0475at 533.456 kb on + strand, within Shew_0475at 533.456 kb on + strand, within Shew_0475at 533.456 kb on + strand, within Shew_0475at 533.464 kb on - strand, within Shew_0475at 533.466 kb on + strand, within Shew_0475at 533.502 kb on + strand, within Shew_0475at 533.528 kb on + strand, within Shew_0475at 533.554 kb on - strandat 533.595 kb on + strandat 533.595 kb on + strandat 533.604 kb on - strandat 533.620 kb on + strandat 533.627 kb on + strandat 533.627 kb on + strandat 533.627 kb on + strandat 533.633 kb on + strandat 533.633 kb on + strandat 533.635 kb on - strandat 533.635 kb on - strandat 533.635 kb on - strandat 533.635 kb on - strandat 533.641 kb on - strandat 533.641 kb on - strandat 533.669 kb on + strandat 533.677 kb on + strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.677 kb on - strandat 533.679 kb on - strandat 533.684 kb on + strandat 533.692 kb on - strandat 533.699 kb on - strandat 533.768 kb on + strandat 533.784 kb on - strandat 533.892 kb on + strandat 533.900 kb on - strandat 533.900 kb on - strandat 533.902 kb on + strandat 533.914 kb on + strandat 533.914 kb on + strandat 533.914 kb on + strandat 533.914 kb on + strandat 533.922 kb on - strandat 533.940 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.947 kb on + strandat 533.955 kb on - strand, within Shew_0476at 533.955 kb on - strand, within Shew_0476at 533.955 kb on - strand, within Shew_0476at 533.955 kb on - strand, within Shew_0476at 533.955 kb on - strand, within Shew_0476at 534.011 kb on - strand, within Shew_0476at 534.046 kb on - strand, within Shew_0476at 534.122 kb on - strand, within Shew_0476at 534.129 kb on - strand, within Shew_0476at 534.203 kb on + strand, within Shew_0476at 534.244 kb on + strand, within Shew_0476at 534.298 kb on - strand, within Shew_0476at 534.316 kb on + strand, within Shew_0476at 534.377 kb on - strand, within Shew_0476at 534.473 kb on + strand, within Shew_0476at 534.473 kb on + strand, within Shew_0476at 534.473 kb on + strand, within Shew_0476at 534.481 kb on - strand, within Shew_0476at 534.521 kb on + strand, within Shew_0476at 534.553 kb on - strand, within Shew_0476at 534.635 kb on + strandat 534.753 kb on - strandat 534.758 kb on - strand, within Shew_0477at 534.891 kb on - strand, within Shew_0477at 534.903 kb on - strand, within Shew_0477at 534.903 kb on - strand, within Shew_0477at 534.924 kb on + strand, within Shew_0477at 535.129 kb on + strand, within Shew_0477at 535.129 kb on + strand, within Shew_0477at 535.241 kb on + strandat 535.301 kb on + strandat 535.524 kb on + strandat 535.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 2000 mM
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532,877 + Shew_0475 0.33 +0.5
532,877 + Shew_0475 0.33 -1.1
532,885 - Shew_0475 0.34 -0.2
532,887 + Shew_0475 0.34 +0.3
532,887 + Shew_0475 0.34 -0.2
532,887 + Shew_0475 0.34 +0.2
532,887 + Shew_0475 0.34 -0.1
532,887 + Shew_0475 0.34 -0.0
532,887 + Shew_0475 0.34 +0.9
532,887 + Shew_0475 0.34 +0.6
532,895 - Shew_0475 0.35 +0.2
532,895 - Shew_0475 0.35 -0.8
532,895 - Shew_0475 0.35 -0.3
532,895 - Shew_0475 0.35 +0.8
532,897 + Shew_0475 0.35 +1.3
532,897 + Shew_0475 0.35 +1.6
532,902 + Shew_0475 0.36 +0.2
532,905 - Shew_0475 0.36 +0.5
532,905 - Shew_0475 0.36 +0.5
532,905 - Shew_0475 0.36 +0.2
532,905 - Shew_0475 0.36 +0.2
532,911 + Shew_0475 0.36 +0.1
532,911 + Shew_0475 0.36 +0.3
532,911 + Shew_0475 0.36 -0.6
532,912 + Shew_0475 0.36 -0.6
532,912 + Shew_0475 0.36 +0.5
532,919 - Shew_0475 0.37 +0.3
532,919 - Shew_0475 0.37 +0.2
532,919 - Shew_0475 0.37 +0.5
532,919 - Shew_0475 0.37 -0.0
532,920 - Shew_0475 0.37 -0.4
532,920 - Shew_0475 0.37 +0.0
532,920 - Shew_0475 0.37 +0.9
532,920 - Shew_0475 0.37 +0.5
532,924 - Shew_0475 0.37 +0.5
532,944 + Shew_0475 0.39 +0.0
532,986 - Shew_0475 0.43 +0.2
532,988 - Shew_0475 0.43 -0.2
533,000 + Shew_0475 0.44 +0.2
533,000 + Shew_0475 0.44 +0.1
533,008 - Shew_0475 0.45 +0.2
533,012 + Shew_0475 0.45 -0.9
533,012 + Shew_0475 0.45 -0.9
533,012 + Shew_0475 0.45 -0.2
533,012 + Shew_0475 0.45 +0.5
533,020 - Shew_0475 0.46 -0.0
533,020 - Shew_0475 0.46 +0.4
533,020 - Shew_0475 0.46 +0.5
533,020 - Shew_0475 0.46 +0.0
533,020 - Shew_0475 0.46 +0.4
533,021 - Shew_0475 0.46 -0.3
533,024 + Shew_0475 0.46 +0.7
533,036 - Shew_0475 0.47 -0.3
533,047 + Shew_0475 0.48 +0.2
533,058 + Shew_0475 0.49 +0.8
533,101 + Shew_0475 0.53 -0.5
533,104 - Shew_0475 0.53 +0.1
533,109 - Shew_0475 0.53 -0.2
533,112 + Shew_0475 0.54 +0.2
533,139 + Shew_0475 0.56 +0.5
533,165 + Shew_0475 0.58 +0.3
533,222 - Shew_0475 0.63 +0.0
533,235 + Shew_0475 0.64 +0.4
533,235 + Shew_0475 0.64 +0.1
533,243 - Shew_0475 0.65 +0.2
533,244 - Shew_0475 0.65 +2.3
533,376 + Shew_0475 0.76 +0.4
533,376 + Shew_0475 0.76 +0.4
533,381 - Shew_0475 0.77 +0.1
533,392 + Shew_0475 0.78 +0.7
533,456 + Shew_0475 0.83 +0.2
533,456 + Shew_0475 0.83 +0.4
533,456 + Shew_0475 0.83 +0.0
533,456 + Shew_0475 0.83 -0.1
533,464 - Shew_0475 0.84 -0.9
533,466 + Shew_0475 0.84 -0.2
533,502 + Shew_0475 0.87 +1.0
533,528 + Shew_0475 0.89 -0.0
533,554 - +0.6
533,595 + -0.1
533,595 + +0.6
533,604 - +0.8
533,620 + -0.5
533,627 + -0.5
533,627 + +0.0
533,627 + -0.1
533,633 + -0.2
533,633 + -0.8
533,635 - +0.1
533,635 - -0.4
533,635 - +0.8
533,635 - +0.3
533,641 - -0.1
533,641 - +0.2
533,669 + -0.5
533,677 + -0.1
533,677 - +0.2
533,677 - +0.2
533,677 - +0.2
533,677 - +0.8
533,677 - +1.1
533,677 - -0.1
533,677 - -0.0
533,677 - +0.1
533,677 - +1.2
533,679 - +0.1
533,684 + +0.4
533,692 - +0.4
533,699 - -0.0
533,768 + +0.6
533,784 - +0.3
533,892 + +0.4
533,900 - +0.1
533,900 - +0.7
533,902 + -0.3
533,914 + +0.0
533,914 + -0.2
533,914 + -1.0
533,914 + -0.3
533,922 - +0.4
533,940 + +0.2
533,947 + +0.4
533,947 + -1.8
533,947 + +0.5
533,947 + +0.9
533,947 + -0.2
533,947 + +0.6
533,947 + +1.8
533,947 + +1.2
533,947 + +0.0
533,955 - Shew_0476 0.11 +0.2
533,955 - Shew_0476 0.11 -0.2
533,955 - Shew_0476 0.11 -0.2
533,955 - Shew_0476 0.11 -0.4
533,955 - Shew_0476 0.11 +0.7
534,011 - Shew_0476 0.18 -0.4
534,046 - Shew_0476 0.22 -1.2
534,122 - Shew_0476 0.32 +0.0
534,129 - Shew_0476 0.32 -0.4
534,203 + Shew_0476 0.42 +0.2
534,244 + Shew_0476 0.47 -0.4
534,298 - Shew_0476 0.54 +0.0
534,316 + Shew_0476 0.56 +0.5
534,377 - Shew_0476 0.64 -0.2
534,473 + Shew_0476 0.76 -0.2
534,473 + Shew_0476 0.76 -0.6
534,473 + Shew_0476 0.76 +0.4
534,481 - Shew_0476 0.77 -0.8
534,521 + Shew_0476 0.82 +0.4
534,553 - Shew_0476 0.86 -0.9
534,635 + +0.1
534,753 - +2.4
534,758 - Shew_0477 0.10 +0.6
534,891 - Shew_0477 0.33 +0.2
534,903 - Shew_0477 0.35 -0.3
534,903 - Shew_0477 0.35 +0.7
534,924 + Shew_0477 0.39 +0.5
535,129 + Shew_0477 0.74 +1.4
535,129 + Shew_0477 0.74 +0.0
535,241 + +0.1
535,301 + -0.2
535,524 + -1.9
535,639 - +0.5

Or see this region's nucleotide sequence