Experiment: nitrate 2000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0278 and Shew_0279 are separated by 43 nucleotides Shew_0279 and Shew_0280 are separated by 207 nucleotides
Shew_0278: Shew_0278 - branched-chain amino acid aminotransferase (RefSeq), at 295,678 to 296,769
_0278
Shew_0279: Shew_0279 - hypothetical protein (RefSeq), at 296,813 to 297,241
_0279
Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150
_0280
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 295.872 kb on - strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 296.070 kb on + strand, within Shew_0278 at 296.140 kb on - strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.613 kb on - strand, within Shew_0278 at 296.908 kb on - strand, within Shew_0279 at 297.082 kb on + strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.151 kb on - strand, within Shew_0279 at 297.157 kb on - strand, within Shew_0279 at 297.446 kb on + strand at 297.454 kb on - strand at 297.752 kb on - strand, within Shew_0280 at 297.875 kb on + strand, within Shew_0280 at 297.893 kb on - strand, within Shew_0280 at 298.049 kb on - strand, within Shew_0280
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 2000 mM remove 295,872 - Shew_0278 0.18 -0.4 295,926 + Shew_0278 0.23 +0.2 295,926 + Shew_0278 0.23 -0.4 296,070 + Shew_0278 0.36 +0.3 296,140 - Shew_0278 0.42 +0.3 296,498 + Shew_0278 0.75 +0.0 296,498 + Shew_0278 0.75 +0.4 296,498 + Shew_0278 0.75 +0.4 296,498 + Shew_0278 0.75 +0.5 296,498 + Shew_0278 0.75 +0.3 296,506 - Shew_0278 0.76 +0.3 296,506 - Shew_0278 0.76 +0.2 296,506 - Shew_0278 0.76 -2.0 296,613 - Shew_0278 0.86 -0.0 296,908 - Shew_0279 0.22 +0.1 297,082 + Shew_0279 0.63 -1.2 297,090 - Shew_0279 0.65 -0.4 297,090 - Shew_0279 0.65 -0.1 297,151 - Shew_0279 0.79 +0.0 297,157 - Shew_0279 0.80 +0.3 297,446 + +0.2 297,454 - +0.3 297,752 - Shew_0280 0.43 -0.5 297,875 + Shew_0280 0.61 +0.6 297,893 - Shew_0280 0.63 +0.2 298,049 - Shew_0280 0.85 -0.0
Or see this region's nucleotide sequence