Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6037

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_6035 and Pf1N1B4_6036 are separated by 179 nucleotidesPf1N1B4_6036 and Pf1N1B4_6037 are separated by 336 nucleotidesPf1N1B4_6037 and Pf1N1B4_6038 are separated by 213 nucleotidesPf1N1B4_6038 and Pf1N1B4_6039 are separated by 4 nucleotides Pf1N1B4_6035 - D-ribose ABC transporter, substrate-binding component RbsB (from data), at 499,543 to 500,499 _6035 Pf1N1B4_6036 - FIG00953132: hypothetical protein, at 500,679 to 501,131 _6036 Pf1N1B4_6037 - L-asparaginase (EC 3.5.1.1), at 501,468 to 502,556 _6037 Pf1N1B4_6038 - FIG00953874: hypothetical protein, at 502,770 to 503,009 _6038 Pf1N1B4_6039 - Endonuclease I precursor (EC 3.1.21.1), at 503,014 to 503,703 _6039 Position (kb) 501 502 503Strain fitness (log2 ratio) -2 -1 0 1 2at 500.516 kb on + strandat 500.608 kb on + strandat 500.608 kb on + strandat 500.608 kb on + strandat 500.609 kb on - strandat 500.609 kb on - strandat 500.609 kb on - strandat 500.675 kb on + strandat 500.676 kb on - strandat 500.676 kb on - strandat 500.676 kb on - strandat 500.910 kb on + strand, within Pf1N1B4_6036at 500.925 kb on - strand, within Pf1N1B4_6036at 500.925 kb on - strand, within Pf1N1B4_6036at 500.925 kb on - strand, within Pf1N1B4_6036at 500.925 kb on - strandat 501.002 kb on + strand, within Pf1N1B4_6036at 501.003 kb on - strand, within Pf1N1B4_6036at 501.065 kb on + strandat 501.122 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.131 kb on + strandat 501.132 kb on - strandat 501.132 kb on - strandat 501.132 kb on - strandat 501.132 kb on - strandat 501.132 kb on - strandat 501.132 kb on - strandat 501.157 kb on - strandat 501.248 kb on - strandat 501.255 kb on - strandat 501.344 kb on + strandat 501.385 kb on + strandat 501.385 kb on + strandat 501.386 kb on - strandat 501.422 kb on + strandat 501.422 kb on + strandat 501.452 kb on - strandat 501.467 kb on - strandat 501.514 kb on + strandat 501.864 kb on + strand, within Pf1N1B4_6037at 501.865 kb on - strandat 501.865 kb on - strand, within Pf1N1B4_6037at 501.911 kb on - strand, within Pf1N1B4_6037at 502.230 kb on + strand, within Pf1N1B4_6037at 502.255 kb on - strandat 502.366 kb on + strand, within Pf1N1B4_6037at 502.366 kb on + strand, within Pf1N1B4_6037at 502.408 kb on + strandat 502.440 kb on + strand, within Pf1N1B4_6037at 502.440 kb on + strand, within Pf1N1B4_6037at 502.441 kb on - strand, within Pf1N1B4_6037at 502.551 kb on + strandat 502.551 kb on + strandat 502.551 kb on + strandat 502.552 kb on - strandat 502.660 kb on - strandat 502.705 kb on - strandat 502.734 kb on + strandat 502.764 kb on - strandat 502.796 kb on + strandat 502.796 kb on + strand, within Pf1N1B4_6038at 502.800 kb on + strand, within Pf1N1B4_6038at 502.800 kb on + strand, within Pf1N1B4_6038at 502.800 kb on + strand, within Pf1N1B4_6038at 502.801 kb on - strand, within Pf1N1B4_6038at 502.801 kb on - strand, within Pf1N1B4_6038at 502.801 kb on - strand, within Pf1N1B4_6038at 502.801 kb on - strand, within Pf1N1B4_6038at 503.036 kb on + strandat 503.119 kb on + strand, within Pf1N1B4_6039at 503.144 kb on - strandat 503.158 kb on + strand, within Pf1N1B4_6039at 503.158 kb on + strand, within Pf1N1B4_6039at 503.159 kb on - strandat 503.195 kb on - strandat 503.195 kb on - strand, within Pf1N1B4_6039at 503.329 kb on + strand, within Pf1N1B4_6039at 503.330 kb on - strand, within Pf1N1B4_6039at 503.330 kb on - strandat 503.437 kb on + strand, within Pf1N1B4_6039at 503.521 kb on + strand, within Pf1N1B4_6039at 503.522 kb on - strand, within Pf1N1B4_6039at 503.522 kb on - strand, within Pf1N1B4_6039at 503.522 kb on - strand, within Pf1N1B4_6039at 503.522 kb on - strand, within Pf1N1B4_6039at 503.527 kb on + strand, within Pf1N1B4_6039at 503.528 kb on - strand, within Pf1N1B4_6039at 503.528 kb on - strand, within Pf1N1B4_6039at 503.528 kb on - strand, within Pf1N1B4_6039at 503.535 kb on + strand, within Pf1N1B4_6039at 503.535 kb on + strand, within Pf1N1B4_6039

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
500,516 + +1.5
500,608 + +1.3
500,608 + -0.0
500,608 + +0.7
500,609 - -0.8
500,609 - +1.7
500,609 - +1.3
500,675 + +0.3
500,676 - -0.5
500,676 - +1.5
500,676 - -0.1
500,910 + Pf1N1B4_6036 0.51 -1.0
500,925 - Pf1N1B4_6036 0.54 +0.3
500,925 - Pf1N1B4_6036 0.54 +1.7
500,925 - Pf1N1B4_6036 0.54 -0.1
500,925 - -1.3
501,002 + Pf1N1B4_6036 0.71 +0.4
501,003 - Pf1N1B4_6036 0.72 +0.7
501,065 + +2.0
501,122 + -1.3
501,131 + -1.1
501,131 + -0.3
501,131 + -1.7
501,131 + -1.7
501,131 + +0.7
501,131 + -0.0
501,131 + +1.3
501,131 + +0.7
501,131 + +1.0
501,131 + +0.1
501,131 + -0.6
501,132 - +0.3
501,132 - -1.9
501,132 - +0.3
501,132 - -0.2
501,132 - -0.3
501,132 - +0.4
501,157 - +2.5
501,248 - -0.3
501,255 - +0.7
501,344 + -1.9
501,385 + -0.3
501,385 + +0.1
501,386 - +0.1
501,422 + -0.2
501,422 + +0.3
501,452 - +0.3
501,467 - +0.9
501,514 + -0.3
501,864 + Pf1N1B4_6037 0.36 -1.1
501,865 - +0.3
501,865 - Pf1N1B4_6037 0.36 +0.2
501,911 - Pf1N1B4_6037 0.41 -1.6
502,230 + Pf1N1B4_6037 0.70 +0.4
502,255 - -0.3
502,366 + Pf1N1B4_6037 0.82 +1.0
502,366 + Pf1N1B4_6037 0.82 -1.5
502,408 + +1.7
502,440 + Pf1N1B4_6037 0.89 -1.9
502,440 + Pf1N1B4_6037 0.89 -2.2
502,441 - Pf1N1B4_6037 0.89 +0.1
502,551 + +0.7
502,551 + +0.7
502,551 + -0.1
502,552 - +0.7
502,660 - +1.3
502,705 - -0.3
502,734 + +1.4
502,764 - -1.7
502,796 + -0.3
502,796 + Pf1N1B4_6038 0.11 +1.3
502,800 + Pf1N1B4_6038 0.12 +0.3
502,800 + Pf1N1B4_6038 0.12 -0.7
502,800 + Pf1N1B4_6038 0.12 +1.3
502,801 - Pf1N1B4_6038 0.13 -0.3
502,801 - Pf1N1B4_6038 0.13 +0.7
502,801 - Pf1N1B4_6038 0.13 -0.9
502,801 - Pf1N1B4_6038 0.13 -0.2
503,036 + -0.9
503,119 + Pf1N1B4_6039 0.15 +0.3
503,144 - -0.3
503,158 + Pf1N1B4_6039 0.21 +0.7
503,158 + Pf1N1B4_6039 0.21 +0.4
503,159 - +2.3
503,195 - -0.3
503,195 - Pf1N1B4_6039 0.26 +1.3
503,329 + Pf1N1B4_6039 0.46 +0.6
503,330 - Pf1N1B4_6039 0.46 +1.3
503,330 - +1.3
503,437 + Pf1N1B4_6039 0.61 +2.0
503,521 + Pf1N1B4_6039 0.73 -0.3
503,522 - Pf1N1B4_6039 0.74 -0.8
503,522 - Pf1N1B4_6039 0.74 +0.3
503,522 - Pf1N1B4_6039 0.74 +0.3
503,522 - Pf1N1B4_6039 0.74 +1.1
503,527 + Pf1N1B4_6039 0.74 +0.8
503,528 - Pf1N1B4_6039 0.74 -0.7
503,528 - Pf1N1B4_6039 0.74 +0.4
503,528 - Pf1N1B4_6039 0.74 -0.3
503,535 + Pf1N1B4_6039 0.76 -0.2
503,535 + Pf1N1B4_6039 0.76 +0.1

Or see this region's nucleotide sequence