Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6035 and Pf1N1B4_6036 are separated by 179 nucleotides Pf1N1B4_6036 and Pf1N1B4_6037 are separated by 336 nucleotides Pf1N1B4_6037 and Pf1N1B4_6038 are separated by 213 nucleotides Pf1N1B4_6038 and Pf1N1B4_6039 are separated by 4 nucleotides
Pf1N1B4_6035 - D-ribose ABC transporter, substrate-binding component RbsB (from data) , at 499,543 to 500,499
_6035
Pf1N1B4_6036 - FIG00953132: hypothetical protein, at 500,679 to 501,131
_6036
Pf1N1B4_6037 - L-asparaginase (EC 3.5.1.1), at 501,468 to 502,556
_6037
Pf1N1B4_6038 - FIG00953874: hypothetical protein, at 502,770 to 503,009
_6038
Pf1N1B4_6039 - Endonuclease I precursor (EC 3.1.21.1), at 503,014 to 503,703
_6039
Position (kb)
501
502
503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 500.516 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.608 kb on + strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.609 kb on - strand at 500.675 kb on + strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.676 kb on - strand at 500.910 kb on + strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand, within Pf1N1B4_6036 at 500.925 kb on - strand at 501.002 kb on + strand, within Pf1N1B4_6036 at 501.003 kb on - strand, within Pf1N1B4_6036 at 501.065 kb on + strand at 501.122 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.131 kb on + strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.132 kb on - strand at 501.157 kb on - strand at 501.248 kb on - strand at 501.255 kb on - strand at 501.344 kb on + strand at 501.385 kb on + strand at 501.385 kb on + strand at 501.386 kb on - strand at 501.422 kb on + strand at 501.422 kb on + strand at 501.452 kb on - strand at 501.467 kb on - strand at 501.514 kb on + strand at 501.864 kb on + strand, within Pf1N1B4_6037 at 501.865 kb on - strand at 501.865 kb on - strand, within Pf1N1B4_6037 at 501.911 kb on - strand, within Pf1N1B4_6037 at 502.230 kb on + strand, within Pf1N1B4_6037 at 502.255 kb on - strand at 502.366 kb on + strand, within Pf1N1B4_6037 at 502.366 kb on + strand, within Pf1N1B4_6037 at 502.408 kb on + strand at 502.440 kb on + strand, within Pf1N1B4_6037 at 502.440 kb on + strand, within Pf1N1B4_6037 at 502.441 kb on - strand, within Pf1N1B4_6037 at 502.551 kb on + strand at 502.551 kb on + strand at 502.551 kb on + strand at 502.552 kb on - strand at 502.660 kb on - strand at 502.705 kb on - strand at 502.734 kb on + strand at 502.764 kb on - strand at 502.796 kb on + strand at 502.796 kb on + strand, within Pf1N1B4_6038 at 502.800 kb on + strand, within Pf1N1B4_6038 at 502.800 kb on + strand, within Pf1N1B4_6038 at 502.800 kb on + strand, within Pf1N1B4_6038 at 502.801 kb on - strand, within Pf1N1B4_6038 at 502.801 kb on - strand, within Pf1N1B4_6038 at 502.801 kb on - strand, within Pf1N1B4_6038 at 502.801 kb on - strand, within Pf1N1B4_6038 at 503.036 kb on + strand at 503.119 kb on + strand, within Pf1N1B4_6039 at 503.144 kb on - strand at 503.158 kb on + strand, within Pf1N1B4_6039 at 503.158 kb on + strand, within Pf1N1B4_6039 at 503.159 kb on - strand at 503.195 kb on - strand at 503.195 kb on - strand, within Pf1N1B4_6039 at 503.329 kb on + strand, within Pf1N1B4_6039 at 503.330 kb on - strand, within Pf1N1B4_6039 at 503.330 kb on - strand at 503.437 kb on + strand, within Pf1N1B4_6039 at 503.521 kb on + strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.522 kb on - strand, within Pf1N1B4_6039 at 503.527 kb on + strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.528 kb on - strand, within Pf1N1B4_6039 at 503.535 kb on + strand, within Pf1N1B4_6039 at 503.535 kb on + strand, within Pf1N1B4_6039
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 500,516 + +1.5 500,608 + +1.3 500,608 + -0.0 500,608 + +0.7 500,609 - -0.8 500,609 - +1.7 500,609 - +1.3 500,675 + +0.3 500,676 - -0.5 500,676 - +1.5 500,676 - -0.1 500,910 + Pf1N1B4_6036 0.51 -1.0 500,925 - Pf1N1B4_6036 0.54 +0.3 500,925 - Pf1N1B4_6036 0.54 +1.7 500,925 - Pf1N1B4_6036 0.54 -0.1 500,925 - -1.3 501,002 + Pf1N1B4_6036 0.71 +0.4 501,003 - Pf1N1B4_6036 0.72 +0.7 501,065 + +2.0 501,122 + -1.3 501,131 + -1.1 501,131 + -0.3 501,131 + -1.7 501,131 + -1.7 501,131 + +0.7 501,131 + -0.0 501,131 + +1.3 501,131 + +0.7 501,131 + +1.0 501,131 + +0.1 501,131 + -0.6 501,132 - +0.3 501,132 - -1.9 501,132 - +0.3 501,132 - -0.2 501,132 - -0.3 501,132 - +0.4 501,157 - +2.5 501,248 - -0.3 501,255 - +0.7 501,344 + -1.9 501,385 + -0.3 501,385 + +0.1 501,386 - +0.1 501,422 + -0.2 501,422 + +0.3 501,452 - +0.3 501,467 - +0.9 501,514 + -0.3 501,864 + Pf1N1B4_6037 0.36 -1.1 501,865 - +0.3 501,865 - Pf1N1B4_6037 0.36 +0.2 501,911 - Pf1N1B4_6037 0.41 -1.6 502,230 + Pf1N1B4_6037 0.70 +0.4 502,255 - -0.3 502,366 + Pf1N1B4_6037 0.82 +1.0 502,366 + Pf1N1B4_6037 0.82 -1.5 502,408 + +1.7 502,440 + Pf1N1B4_6037 0.89 -1.9 502,440 + Pf1N1B4_6037 0.89 -2.2 502,441 - Pf1N1B4_6037 0.89 +0.1 502,551 + +0.7 502,551 + +0.7 502,551 + -0.1 502,552 - +0.7 502,660 - +1.3 502,705 - -0.3 502,734 + +1.4 502,764 - -1.7 502,796 + -0.3 502,796 + Pf1N1B4_6038 0.11 +1.3 502,800 + Pf1N1B4_6038 0.12 +0.3 502,800 + Pf1N1B4_6038 0.12 -0.7 502,800 + Pf1N1B4_6038 0.12 +1.3 502,801 - Pf1N1B4_6038 0.13 -0.3 502,801 - Pf1N1B4_6038 0.13 +0.7 502,801 - Pf1N1B4_6038 0.13 -0.9 502,801 - Pf1N1B4_6038 0.13 -0.2 503,036 + -0.9 503,119 + Pf1N1B4_6039 0.15 +0.3 503,144 - -0.3 503,158 + Pf1N1B4_6039 0.21 +0.7 503,158 + Pf1N1B4_6039 0.21 +0.4 503,159 - +2.3 503,195 - -0.3 503,195 - Pf1N1B4_6039 0.26 +1.3 503,329 + Pf1N1B4_6039 0.46 +0.6 503,330 - Pf1N1B4_6039 0.46 +1.3 503,330 - +1.3 503,437 + Pf1N1B4_6039 0.61 +2.0 503,521 + Pf1N1B4_6039 0.73 -0.3 503,522 - Pf1N1B4_6039 0.74 -0.8 503,522 - Pf1N1B4_6039 0.74 +0.3 503,522 - Pf1N1B4_6039 0.74 +0.3 503,522 - Pf1N1B4_6039 0.74 +1.1 503,527 + Pf1N1B4_6039 0.74 +0.8 503,528 - Pf1N1B4_6039 0.74 -0.7 503,528 - Pf1N1B4_6039 0.74 +0.4 503,528 - Pf1N1B4_6039 0.74 -0.3 503,535 + Pf1N1B4_6039 0.76 -0.2 503,535 + Pf1N1B4_6039 0.76 +0.1
Or see this region's nucleotide sequence