Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_560 and Pf1N1B4_561 are separated by 99 nucleotides Pf1N1B4_561 and Pf1N1B4_562 are separated by 143 nucleotides Pf1N1B4_562 and Pf1N1B4_563 overlap by 4 nucleotides Pf1N1B4_563 and Pf1N1B4_564 are separated by 233 nucleotides
Pf1N1B4_560 - Transcriptional regulators, LysR family, at 657,019 to 657,951
_560
Pf1N1B4_561 - Glutathione S-transferase (EC 2.5.1.18), at 658,051 to 658,653
_561
Pf1N1B4_562 - Histidine transporter, periplasmic histidine-binding protein, at 658,797 to 659,810
_562
Pf1N1B4_563 - RNA polymerase sigma-70 factor, at 659,807 to 660,355
_563
Pf1N1B4_564 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 660,589 to 661,353
_564
Position (kb) 658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.957 kb on + strand at 657.958 kb on - strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.014 kb on - strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.264 kb on + strand, within Pf1N1B4_561 at 658.265 kb on - strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand at 658.483 kb on + strand at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.520 kb on - strand, within Pf1N1B4_561 at 658.527 kb on + strand, within Pf1N1B4_561 at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.712 kb on - strand at 658.712 kb on - strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.776 kb on + strand at 658.777 kb on - strand at 658.777 kb on - strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 659.165 kb on - strand, within Pf1N1B4_562 at 659.165 kb on - strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.249 kb on - strand, within Pf1N1B4_562 at 659.249 kb on - strand, within Pf1N1B4_562 at 659.266 kb on + strand at 659.267 kb on - strand, within Pf1N1B4_562 at 659.267 kb on - strand, within Pf1N1B4_562 at 659.418 kb on - strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.892 kb on + strand, within Pf1N1B4_563 at 659.892 kb on + strand, within Pf1N1B4_563 at 659.892 kb on + strand, within Pf1N1B4_563 at 659.892 kb on + strand, within Pf1N1B4_563 at 659.893 kb on - strand, within Pf1N1B4_563 at 659.893 kb on - strand, within Pf1N1B4_563 at 659.943 kb on + strand, within Pf1N1B4_563 at 659.943 kb on + strand, within Pf1N1B4_563 at 660.138 kb on + strand, within Pf1N1B4_563 at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.356 kb on - strand at 660.356 kb on - strand at 660.412 kb on - strand at 660.412 kb on - strand at 660.412 kb on - strand at 660.412 kb on - strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.485 kb on + strand at 660.486 kb on - strand at 660.486 kb on - strand at 660.651 kb on - strand at 660.785 kb on + strand, within Pf1N1B4_564 at 660.785 kb on + strand, within Pf1N1B4_564 at 660.786 kb on - strand, within Pf1N1B4_564
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 657,957 + +0.4 657,958 - -0.1 658,013 + -2.1 658,013 + +0.2 658,013 + -0.6 658,014 - -1.1 658,060 + -0.1 658,060 + +1.3 658,060 + +1.5 658,060 + -0.3 658,060 + +0.8 658,060 + -0.1 658,060 + -0.6 658,061 - -1.3 658,061 - -0.7 658,061 - +1.8 658,061 - -0.4 658,061 - -0.8 658,264 + Pf1N1B4_561 0.35 +2.3 658,265 - Pf1N1B4_561 0.35 -1.1 658,483 + Pf1N1B4_561 0.72 +1.5 658,483 + -0.1 658,483 + -1.6 658,483 + Pf1N1B4_561 0.72 -2.1 658,483 + Pf1N1B4_561 0.72 -0.6 658,483 + Pf1N1B4_561 0.72 -1.1 658,519 + Pf1N1B4_561 0.78 -0.8 658,519 + Pf1N1B4_561 0.78 +1.9 658,520 - Pf1N1B4_561 0.78 +1.8 658,527 + Pf1N1B4_561 0.79 +0.5 658,711 + -0.5 658,711 + +1.8 658,711 + +0.7 658,711 + +0.9 658,711 + +2.3 658,711 + +1.3 658,711 + -1.9 658,711 + -0.4 658,711 + -0.7 658,711 + -1.4 658,711 + -0.8 658,712 - -0.1 658,712 - -0.1 658,713 + +1.1 658,713 + +0.2 658,713 + -0.3 658,713 + -2.4 658,713 + -0.1 658,714 - -0.1 658,714 - +1.3 658,714 - -0.5 658,776 + +0.4 658,777 - +1.8 658,777 - +0.9 658,786 + -0.8 658,786 + -0.6 658,786 + -0.2 658,787 - +0.4 658,787 - -2.4 658,787 - +0.4 658,787 - +0.4 658,787 - +0.9 658,799 - -0.9 658,799 - -0.2 658,799 - +0.4 658,799 - -0.6 659,165 - Pf1N1B4_562 0.36 -0.9 659,165 - Pf1N1B4_562 0.36 -0.6 659,248 + Pf1N1B4_562 0.44 -0.7 659,248 + Pf1N1B4_562 0.44 +0.4 659,248 + Pf1N1B4_562 0.44 -2.9 659,249 - Pf1N1B4_562 0.45 -0.1 659,249 - Pf1N1B4_562 0.45 +0.8 659,266 + +0.5 659,267 - Pf1N1B4_562 0.46 -0.4 659,267 - Pf1N1B4_562 0.46 +0.9 659,418 - Pf1N1B4_562 0.61 -0.5 659,449 + Pf1N1B4_562 0.64 -2.4 659,449 + Pf1N1B4_562 0.64 -0.1 659,449 + Pf1N1B4_562 0.64 -0.6 659,450 - Pf1N1B4_562 0.64 -0.8 659,450 - Pf1N1B4_562 0.64 +1.3 659,450 - Pf1N1B4_562 0.64 -1.1 659,450 - Pf1N1B4_562 0.64 +1.2 659,892 + Pf1N1B4_563 0.15 +1.2 659,892 + Pf1N1B4_563 0.15 +0.6 659,892 + Pf1N1B4_563 0.15 +0.3 659,892 + Pf1N1B4_563 0.15 +0.3 659,893 - Pf1N1B4_563 0.16 -1.1 659,893 - Pf1N1B4_563 0.16 -0.1 659,943 + Pf1N1B4_563 0.25 +0.3 659,943 + Pf1N1B4_563 0.25 +0.4 660,138 + Pf1N1B4_563 0.60 -1.6 660,355 + -0.4 660,355 + +2.9 660,355 + -0.1 660,355 + -0.4 660,355 + +0.8 660,356 - -0.5 660,356 - -1.1 660,412 - -0.1 660,412 - -0.1 660,412 - +1.5 660,412 - +0.4 660,485 + +1.5 660,485 + +0.2 660,485 + -1.6 660,485 + -1.1 660,485 + -0.1 660,485 + -0.6 660,485 + +0.4 660,485 + +2.3 660,485 + +1.5 660,486 - +0.9 660,486 - +1.5 660,651 - -0.1 660,785 + Pf1N1B4_564 0.26 +0.6 660,785 + Pf1N1B4_564 0.26 +0.1 660,786 - Pf1N1B4_564 0.26 +1.5
Or see this region's nucleotide sequence