Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5554 and Pf1N1B4_5555 are separated by 172 nucleotides Pf1N1B4_5555 and Pf1N1B4_5556 are separated by 203 nucleotides Pf1N1B4_5556 and Pf1N1B4_5557 are separated by 200 nucleotides Pf1N1B4_5557 and Pf1N1B4_5558 are separated by 64 nucleotides
Pf1N1B4_5554 - hypothetical protein, at 326,976 to 327,200
_5554
Pf1N1B4_5555 - hypothetical protein, at 327,373 to 327,657
_5555
Pf1N1B4_5556 - hypothetical protein, at 327,861 to 328,058
_5556
Pf1N1B4_5557 - hypothetical protein, at 328,259 to 328,720
_5557
Pf1N1B4_5558 - hypothetical protein, at 328,785 to 329,069
_5558
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 326.992 kb on + strand at 327.041 kb on - strand, within Pf1N1B4_5554 at 327.041 kb on - strand, within Pf1N1B4_5554 at 327.098 kb on - strand, within Pf1N1B4_5554 at 327.098 kb on - strand, within Pf1N1B4_5554 at 327.098 kb on - strand, within Pf1N1B4_5554 at 327.193 kb on - strand at 327.219 kb on - strand at 327.219 kb on - strand at 327.219 kb on - strand at 327.294 kb on - strand at 327.294 kb on - strand at 327.294 kb on - strand at 327.361 kb on - strand at 327.392 kb on + strand at 327.393 kb on - strand at 327.396 kb on - strand at 327.396 kb on - strand at 327.396 kb on - strand at 327.467 kb on + strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.468 kb on - strand, within Pf1N1B4_5555 at 327.473 kb on + strand, within Pf1N1B4_5555 at 327.474 kb on - strand, within Pf1N1B4_5555 at 327.474 kb on - strand at 327.530 kb on - strand, within Pf1N1B4_5555 at 327.580 kb on + strand, within Pf1N1B4_5555 at 327.581 kb on - strand, within Pf1N1B4_5555 at 327.581 kb on - strand, within Pf1N1B4_5555 at 327.581 kb on - strand, within Pf1N1B4_5555 at 327.601 kb on - strand, within Pf1N1B4_5555 at 327.601 kb on - strand, within Pf1N1B4_5555 at 327.608 kb on + strand, within Pf1N1B4_5555 at 327.609 kb on - strand, within Pf1N1B4_5555 at 327.805 kb on + strand at 327.806 kb on - strand at 327.888 kb on - strand, within Pf1N1B4_5556 at 327.952 kb on + strand, within Pf1N1B4_5556 at 327.953 kb on - strand, within Pf1N1B4_5556 at 327.953 kb on - strand at 327.953 kb on - strand, within Pf1N1B4_5556 at 327.993 kb on - strand, within Pf1N1B4_5556 at 328.144 kb on - strand at 328.193 kb on + strand at 328.193 kb on + strand at 328.193 kb on + strand at 328.193 kb on + strand at 328.194 kb on - strand at 328.194 kb on - strand at 328.194 kb on - strand at 328.225 kb on + strand at 328.225 kb on + strand at 328.225 kb on + strand at 328.225 kb on + strand at 328.225 kb on + strand at 328.225 kb on + strand at 328.226 kb on - strand at 328.244 kb on - strand at 328.261 kb on - strand at 328.261 kb on - strand at 328.352 kb on + strand, within Pf1N1B4_5557 at 328.352 kb on + strand, within Pf1N1B4_5557 at 328.378 kb on + strand, within Pf1N1B4_5557 at 328.390 kb on + strand, within Pf1N1B4_5557 at 328.391 kb on - strand, within Pf1N1B4_5557 at 328.391 kb on - strand, within Pf1N1B4_5557 at 328.391 kb on - strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.392 kb on + strand at 328.392 kb on + strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.393 kb on - strand, within Pf1N1B4_5557 at 328.408 kb on + strand at 328.408 kb on + strand, within Pf1N1B4_5557 at 328.409 kb on - strand, within Pf1N1B4_5557 at 328.670 kb on + strand, within Pf1N1B4_5557 at 328.673 kb on + strand, within Pf1N1B4_5557 at 328.674 kb on - strand at 328.674 kb on - strand at 328.674 kb on - strand at 328.674 kb on - strand at 328.759 kb on + strand at 328.759 kb on + strand at 328.759 kb on + strand at 328.759 kb on + strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.760 kb on - strand at 328.802 kb on + strand at 328.803 kb on - strand at 328.803 kb on - strand at 328.803 kb on - strand at 328.803 kb on - strand at 328.806 kb on + strand at 328.806 kb on + strand at 328.807 kb on - strand at 328.879 kb on + strand, within Pf1N1B4_5558 at 328.880 kb on - strand, within Pf1N1B4_5558 at 328.880 kb on - strand, within Pf1N1B4_5558 at 328.890 kb on + strand, within Pf1N1B4_5558 at 328.890 kb on + strand, within Pf1N1B4_5558 at 328.890 kb on + strand, within Pf1N1B4_5558 at 328.890 kb on + strand, within Pf1N1B4_5558 at 328.891 kb on - strand, within Pf1N1B4_5558 at 328.891 kb on - strand, within Pf1N1B4_5558 at 328.913 kb on + strand, within Pf1N1B4_5558 at 328.913 kb on + strand, within Pf1N1B4_5558 at 328.913 kb on + strand, within Pf1N1B4_5558 at 328.914 kb on - strand, within Pf1N1B4_5558 at 328.995 kb on + strand, within Pf1N1B4_5558 at 328.995 kb on + strand, within Pf1N1B4_5558 at 328.996 kb on - strand, within Pf1N1B4_5558 at 328.996 kb on - strand at 329.038 kb on - strand, within Pf1N1B4_5558
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 326,992 + -1.0 327,041 - Pf1N1B4_5554 0.29 +1.5 327,041 - Pf1N1B4_5554 0.29 +0.4 327,098 - Pf1N1B4_5554 0.54 -0.1 327,098 - Pf1N1B4_5554 0.54 -1.9 327,098 - Pf1N1B4_5554 0.54 -0.8 327,193 - +2.5 327,219 - -1.1 327,219 - -2.2 327,219 - +0.1 327,294 - +0.9 327,294 - +1.1 327,294 - -0.4 327,361 - +0.1 327,392 + -2.7 327,393 - -0.3 327,396 - -0.0 327,396 - -2.9 327,396 - -0.4 327,467 + Pf1N1B4_5555 0.33 +0.1 327,468 - Pf1N1B4_5555 0.33 -1.7 327,468 - Pf1N1B4_5555 0.33 +0.9 327,468 - Pf1N1B4_5555 0.33 -1.4 327,468 - Pf1N1B4_5555 0.33 -0.7 327,468 - Pf1N1B4_5555 0.33 -0.3 327,468 - Pf1N1B4_5555 0.33 +0.6 327,473 + Pf1N1B4_5555 0.35 +2.3 327,474 - Pf1N1B4_5555 0.35 +1.1 327,474 - +1.7 327,530 - Pf1N1B4_5555 0.55 +1.7 327,580 + Pf1N1B4_5555 0.73 +0.1 327,581 - Pf1N1B4_5555 0.73 +1.1 327,581 - Pf1N1B4_5555 0.73 -0.4 327,581 - Pf1N1B4_5555 0.73 -0.6 327,601 - Pf1N1B4_5555 0.80 +0.7 327,601 - Pf1N1B4_5555 0.80 -0.3 327,608 + Pf1N1B4_5555 0.82 +0.1 327,609 - Pf1N1B4_5555 0.83 +0.1 327,805 + -1.4 327,806 - -1.7 327,888 - Pf1N1B4_5556 0.14 -1.0 327,952 + Pf1N1B4_5556 0.46 -2.2 327,953 - Pf1N1B4_5556 0.46 -1.2 327,953 - -0.4 327,953 - Pf1N1B4_5556 0.46 +1.1 327,993 - Pf1N1B4_5556 0.67 -1.0 328,144 - +0.6 328,193 + +0.6 328,193 + +0.1 328,193 + +1.7 328,193 + +1.1 328,194 - +1.6 328,194 - -0.3 328,194 - -0.7 328,225 + -0.4 328,225 + +0.5 328,225 + +0.1 328,225 + -0.5 328,225 + +0.5 328,225 + +0.9 328,226 - -0.9 328,244 - -0.5 328,261 - +1.7 328,261 - +1.1 328,352 + Pf1N1B4_5557 0.20 +0.1 328,352 + Pf1N1B4_5557 0.20 +0.9 328,378 + Pf1N1B4_5557 0.26 +0.8 328,390 + Pf1N1B4_5557 0.28 +1.1 328,391 - Pf1N1B4_5557 0.29 -0.3 328,391 - Pf1N1B4_5557 0.29 -0.7 328,391 - Pf1N1B4_5557 0.29 +0.3 328,392 + Pf1N1B4_5557 0.29 -0.9 328,392 + Pf1N1B4_5557 0.29 +0.7 328,392 + Pf1N1B4_5557 0.29 -1.2 328,392 + Pf1N1B4_5557 0.29 -1.7 328,392 + Pf1N1B4_5557 0.29 +1.3 328,392 + -0.9 328,392 + Pf1N1B4_5557 0.29 -0.2 328,392 + Pf1N1B4_5557 0.29 +0.1 328,392 + Pf1N1B4_5557 0.29 -0.2 328,392 + -1.9 328,392 + Pf1N1B4_5557 0.29 +1.7 328,393 - Pf1N1B4_5557 0.29 +0.6 328,393 - Pf1N1B4_5557 0.29 +0.7 328,393 - Pf1N1B4_5557 0.29 +0.8 328,393 - Pf1N1B4_5557 0.29 +1.5 328,393 - Pf1N1B4_5557 0.29 +1.0 328,393 - Pf1N1B4_5557 0.29 +0.4 328,393 - Pf1N1B4_5557 0.29 +0.1 328,393 - Pf1N1B4_5557 0.29 +0.0 328,393 - Pf1N1B4_5557 0.29 +0.7 328,393 - Pf1N1B4_5557 0.29 -0.6 328,393 - Pf1N1B4_5557 0.29 +0.8 328,393 - Pf1N1B4_5557 0.29 +0.5 328,393 - Pf1N1B4_5557 0.29 +2.3 328,408 + +2.5 328,408 + Pf1N1B4_5557 0.32 -1.2 328,409 - Pf1N1B4_5557 0.32 -0.2 328,670 + Pf1N1B4_5557 0.89 -2.7 328,673 + Pf1N1B4_5557 0.90 -0.3 328,674 - +1.9 328,674 - +0.1 328,674 - +0.5 328,674 - +0.1 328,759 + +0.9 328,759 + -2.2 328,759 + +0.9 328,759 + +0.1 328,760 - -0.1 328,760 - +0.6 328,760 - -0.0 328,760 - +0.5 328,760 - -1.4 328,760 - -1.4 328,760 - -0.7 328,760 - +1.1 328,802 + -0.2 328,803 - +0.2 328,803 - -0.4 328,803 - -0.3 328,803 - -1.2 328,806 + -0.2 328,806 + +0.1 328,807 - -1.1 328,879 + Pf1N1B4_5558 0.33 -0.7 328,880 - Pf1N1B4_5558 0.33 +2.9 328,880 - Pf1N1B4_5558 0.33 -0.2 328,890 + Pf1N1B4_5558 0.37 -0.1 328,890 + Pf1N1B4_5558 0.37 -0.3 328,890 + Pf1N1B4_5558 0.37 -0.3 328,890 + Pf1N1B4_5558 0.37 +1.0 328,891 - Pf1N1B4_5558 0.37 +0.7 328,891 - Pf1N1B4_5558 0.37 -1.4 328,913 + Pf1N1B4_5558 0.45 -0.3 328,913 + Pf1N1B4_5558 0.45 +0.4 328,913 + Pf1N1B4_5558 0.45 +0.5 328,914 - Pf1N1B4_5558 0.45 -0.1 328,995 + Pf1N1B4_5558 0.74 -2.0 328,995 + Pf1N1B4_5558 0.74 +2.5 328,996 - Pf1N1B4_5558 0.74 +0.1 328,996 - -1.4 329,038 - Pf1N1B4_5558 0.89 -0.7
Or see this region's nucleotide sequence