Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5153

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5152 and Pf1N1B4_5153 are separated by 525 nucleotidesPf1N1B4_5153 and Pf1N1B4_5154 are separated by 332 nucleotides Pf1N1B4_5152 - hypothetical protein, at 5,739,219 to 5,740,121 _5152 Pf1N1B4_5153 - Putative membrane-bound ClpP-class protease associated with aq_911, at 5,740,647 to 5,742,023 _5153 Pf1N1B4_5154 - hypothetical protein, at 5,742,356 to 5,742,574 _5154 Position (kb) 5740 5741 5742 5743Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5739.690 kb on + strand, within Pf1N1B4_5152at 5739.691 kb on - strandat 5739.989 kb on + strandat 5739.990 kb on - strand, within Pf1N1B4_5152at 5740.034 kb on + strandat 5740.034 kb on + strandat 5740.137 kb on + strandat 5740.177 kb on + strandat 5740.177 kb on + strandat 5740.177 kb on + strandat 5740.179 kb on + strandat 5740.179 kb on + strandat 5740.179 kb on + strandat 5740.179 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.204 kb on + strandat 5740.205 kb on - strandat 5740.205 kb on - strandat 5740.205 kb on - strandat 5740.205 kb on - strandat 5740.205 kb on - strandat 5740.205 kb on - strandat 5740.401 kb on + strandat 5740.416 kb on + strandat 5740.441 kb on + strandat 5740.491 kb on + strandat 5740.491 kb on + strandat 5740.491 kb on + strandat 5740.491 kb on + strandat 5740.596 kb on - strandat 5740.596 kb on - strandat 5740.596 kb on - strandat 5740.628 kb on - strandat 5740.681 kb on + strandat 5740.735 kb on + strandat 5740.736 kb on - strandat 5740.779 kb on + strandat 5740.779 kb on + strandat 5740.780 kb on - strandat 5740.881 kb on - strand, within Pf1N1B4_5153at 5740.962 kb on + strandat 5740.963 kb on - strandat 5740.963 kb on - strand, within Pf1N1B4_5153at 5740.965 kb on - strand, within Pf1N1B4_5153at 5740.965 kb on - strand, within Pf1N1B4_5153at 5741.022 kb on - strand, within Pf1N1B4_5153at 5741.114 kb on + strand, within Pf1N1B4_5153at 5741.114 kb on + strand, within Pf1N1B4_5153at 5741.115 kb on - strandat 5741.151 kb on + strand, within Pf1N1B4_5153at 5741.151 kb on + strand, within Pf1N1B4_5153at 5741.151 kb on + strandat 5741.152 kb on - strand, within Pf1N1B4_5153at 5741.152 kb on - strand, within Pf1N1B4_5153at 5741.152 kb on - strand, within Pf1N1B4_5153at 5741.265 kb on + strand, within Pf1N1B4_5153at 5741.266 kb on - strand, within Pf1N1B4_5153at 5741.266 kb on - strand, within Pf1N1B4_5153at 5741.535 kb on + strand, within Pf1N1B4_5153at 5741.563 kb on - strand, within Pf1N1B4_5153at 5741.635 kb on + strand, within Pf1N1B4_5153at 5741.698 kb on + strand, within Pf1N1B4_5153at 5742.078 kb on + strandat 5742.372 kb on - strandat 5742.372 kb on - strandat 5742.987 kb on - strandat 5742.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,739,690 + Pf1N1B4_5152 0.52 -2.1
5,739,691 - -0.5
5,739,989 + -1.1
5,739,990 - Pf1N1B4_5152 0.85 -0.2
5,740,034 + +1.1
5,740,034 + +0.3
5,740,137 + +0.2
5,740,177 + -0.7
5,740,177 + -0.9
5,740,177 + -0.8
5,740,179 + -0.1
5,740,179 + +0.2
5,740,179 + +0.6
5,740,179 + +1.3
5,740,204 + -2.0
5,740,204 + +0.2
5,740,204 + +0.1
5,740,204 + +1.1
5,740,204 + +0.6
5,740,204 + -0.1
5,740,204 + +1.2
5,740,205 - +0.9
5,740,205 - -0.5
5,740,205 - -1.8
5,740,205 - +0.5
5,740,205 - -1.5
5,740,205 - -0.5
5,740,401 + +2.1
5,740,416 + -0.5
5,740,441 + -0.1
5,740,491 + +2.8
5,740,491 + -0.5
5,740,491 + +0.6
5,740,491 + +0.1
5,740,596 - +0.2
5,740,596 - +0.1
5,740,596 - +0.5
5,740,628 - -0.5
5,740,681 + +0.4
5,740,735 + +0.8
5,740,736 - +1.1
5,740,779 + +0.1
5,740,779 + +0.1
5,740,780 - -0.5
5,740,881 - Pf1N1B4_5153 0.17 +0.1
5,740,962 + -1.5
5,740,963 - -0.5
5,740,963 - Pf1N1B4_5153 0.23 -0.5
5,740,965 - Pf1N1B4_5153 0.23 +1.3
5,740,965 - Pf1N1B4_5153 0.23 -0.7
5,741,022 - Pf1N1B4_5153 0.27 +0.3
5,741,114 + Pf1N1B4_5153 0.34 -1.2
5,741,114 + Pf1N1B4_5153 0.34 +0.2
5,741,115 - -0.5
5,741,151 + Pf1N1B4_5153 0.37 -1.8
5,741,151 + Pf1N1B4_5153 0.37 -0.3
5,741,151 + -1.1
5,741,152 - Pf1N1B4_5153 0.37 +0.1
5,741,152 - Pf1N1B4_5153 0.37 -1.4
5,741,152 - Pf1N1B4_5153 0.37 -2.8
5,741,265 + Pf1N1B4_5153 0.45 -0.5
5,741,266 - Pf1N1B4_5153 0.45 -0.3
5,741,266 - Pf1N1B4_5153 0.45 -1.1
5,741,535 + Pf1N1B4_5153 0.64 -1.5
5,741,563 - Pf1N1B4_5153 0.67 -0.2
5,741,635 + Pf1N1B4_5153 0.72 -0.5
5,741,698 + Pf1N1B4_5153 0.76 -3.1
5,742,078 + -0.3
5,742,372 - +0.2
5,742,372 - +0.5
5,742,987 - -0.2
5,742,993 - +0.6

Or see this region's nucleotide sequence