Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4786

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4784 and Pf1N1B4_4785 are separated by 16 nucleotidesPf1N1B4_4785 and Pf1N1B4_4786 are separated by 12 nucleotidesPf1N1B4_4786 and Pf1N1B4_4787 are separated by 165 nucleotides Pf1N1B4_4784 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases, at 5,285,831 to 5,287,495 _4784 Pf1N1B4_4785 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 5,287,512 to 5,288,273 _4785 Pf1N1B4_4786 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 5,288,286 to 5,289,479 _4786 Pf1N1B4_4787 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 5,289,645 to 5,290,772 _4787 Position (kb) 5288 5289 5290Strain fitness (log2 ratio) -1 0 1 2 3at 5287.432 kb on + strandat 5288.182 kb on - strand, within Pf1N1B4_4785at 5288.202 kb on - strandat 5288.202 kb on - strandat 5288.202 kb on - strandat 5288.202 kb on - strandat 5288.206 kb on + strandat 5288.206 kb on + strandat 5288.271 kb on + strandat 5288.272 kb on - strandat 5288.272 kb on - strandat 5288.281 kb on + strandat 5288.282 kb on - strandat 5288.282 kb on - strandat 5288.282 kb on - strandat 5288.312 kb on + strandat 5288.313 kb on - strandat 5288.313 kb on - strandat 5288.313 kb on - strandat 5289.036 kb on - strandat 5289.474 kb on + strandat 5289.474 kb on + strandat 5289.617 kb on + strandat 5289.761 kb on + strandat 5289.762 kb on - strand, within Pf1N1B4_4787at 5289.917 kb on - strand, within Pf1N1B4_4787at 5290.080 kb on + strand, within Pf1N1B4_4787at 5290.080 kb on + strand, within Pf1N1B4_4787at 5290.215 kb on + strand, within Pf1N1B4_4787at 5290.218 kb on - strand, within Pf1N1B4_4787at 5290.218 kb on - strandat 5290.262 kb on + strand, within Pf1N1B4_4787

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,287,432 + -0.1
5,288,182 - Pf1N1B4_4785 0.88 +0.1
5,288,202 - -0.1
5,288,202 - -0.9
5,288,202 - -0.9
5,288,202 - +0.7
5,288,206 + +2.3
5,288,206 + -0.1
5,288,271 + -1.1
5,288,272 - +0.3
5,288,272 - +1.7
5,288,281 + +0.2
5,288,282 - +0.0
5,288,282 - +3.0
5,288,282 - -0.3
5,288,312 + +1.5
5,288,313 - -0.5
5,288,313 - +1.5
5,288,313 - +0.7
5,289,036 - -0.5
5,289,474 + +1.8
5,289,474 + +0.2
5,289,617 + +0.7
5,289,761 + +0.1
5,289,762 - Pf1N1B4_4787 0.10 +1.1
5,289,917 - Pf1N1B4_4787 0.24 -0.5
5,290,080 + Pf1N1B4_4787 0.39 -0.5
5,290,080 + Pf1N1B4_4787 0.39 +0.5
5,290,215 + Pf1N1B4_4787 0.51 +1.9
5,290,218 - Pf1N1B4_4787 0.51 -0.5
5,290,218 - +1.1
5,290,262 + Pf1N1B4_4787 0.55 +0.5

Or see this region's nucleotide sequence