Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4592 and Pf1N1B4_4593 are separated by 4 nucleotides Pf1N1B4_4593 and Pf1N1B4_4594 overlap by 4 nucleotides
Pf1N1B4_4592 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,062,923 to 5,063,996
_4592
Pf1N1B4_4593 - ABC transporter, periplasmic substrate-binding protein, at 5,064,001 to 5,065,842
_4593
Pf1N1B4_4594 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 5,065,839 to 5,067,671
_4594
Position (kb)
5064
5065
5066 Strain fitness (log2 ratio)
-1
0
1
2 at 5063.249 kb on - strand, within Pf1N1B4_4592 at 5063.354 kb on - strand, within Pf1N1B4_4592 at 5063.746 kb on + strand, within Pf1N1B4_4592 at 5063.747 kb on - strand, within Pf1N1B4_4592 at 5064.098 kb on + strand at 5064.099 kb on - strand at 5064.099 kb on - strand at 5064.179 kb on + strand at 5064.183 kb on - strand at 5064.614 kb on + strand, within Pf1N1B4_4593 at 5064.983 kb on + strand, within Pf1N1B4_4593 at 5064.984 kb on - strand, within Pf1N1B4_4593 at 5064.984 kb on - strand, within Pf1N1B4_4593 at 5064.984 kb on - strand, within Pf1N1B4_4593 at 5065.448 kb on - strand, within Pf1N1B4_4593 at 5065.487 kb on + strand, within Pf1N1B4_4593 at 5065.488 kb on - strand, within Pf1N1B4_4593 at 5065.589 kb on + strand, within Pf1N1B4_4593 at 5065.703 kb on - strand at 5065.942 kb on + strand at 5065.942 kb on + strand at 5065.942 kb on + strand at 5065.969 kb on + strand at 5065.970 kb on - strand at 5065.970 kb on - strand at 5066.218 kb on + strand, within Pf1N1B4_4594 at 5066.570 kb on - strand at 5066.588 kb on - strand, within Pf1N1B4_4594 at 5066.633 kb on + strand, within Pf1N1B4_4594
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 5,063,249 - Pf1N1B4_4592 0.30 +0.5 5,063,354 - Pf1N1B4_4592 0.40 -1.5 5,063,746 + Pf1N1B4_4592 0.77 +0.7 5,063,747 - Pf1N1B4_4592 0.77 +0.3 5,064,098 + +0.1 5,064,099 - -0.1 5,064,099 - -0.8 5,064,179 + -0.5 5,064,183 - +1.1 5,064,614 + Pf1N1B4_4593 0.33 -0.1 5,064,983 + Pf1N1B4_4593 0.53 +0.5 5,064,984 - Pf1N1B4_4593 0.53 -0.2 5,064,984 - Pf1N1B4_4593 0.53 +0.1 5,064,984 - Pf1N1B4_4593 0.53 +0.8 5,065,448 - Pf1N1B4_4593 0.79 -1.3 5,065,487 + Pf1N1B4_4593 0.81 -1.2 5,065,488 - Pf1N1B4_4593 0.81 -0.9 5,065,589 + Pf1N1B4_4593 0.86 +0.1 5,065,703 - -0.3 5,065,942 + +0.5 5,065,942 + -0.0 5,065,942 + +1.3 5,065,969 + -1.1 5,065,970 - -0.9 5,065,970 - +0.4 5,066,218 + Pf1N1B4_4594 0.21 +0.3 5,066,570 - +2.1 5,066,588 - Pf1N1B4_4594 0.41 -1.5 5,066,633 + Pf1N1B4_4594 0.43 +0.3
Or see this region's nucleotide sequence