Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3943

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3942 and Pf1N1B4_3943 are separated by 238 nucleotidesPf1N1B4_3943 and Pf1N1B4_5230 are separated by 275 nucleotidesPf1N1B4_5230 and Pf1N1B4_5231 are separated by 35 nucleotidesPf1N1B4_5231 and Pf1N1B4_5232 are separated by 60 nucleotidesPf1N1B4_5232 and Pf1N1B4_5233 are separated by 81 nucleotides Pf1N1B4_3942 - Murein-DD-endopeptidase (EC 3.4.99.-), at 4,377,219 to 4,378,157 _3942 Pf1N1B4_3943 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 4,378,396 to 4,379,250 _3943 Pf1N1B4_5230 - tRNA-Arg-TCT, at 4,379,526 to 4,379,599 _5230 Pf1N1B4_5231 - tRNA-His-GTG, at 4,379,635 to 4,379,707 _5231 Pf1N1B4_5232 - tRNA-Leu-TAG, at 4,379,768 to 4,379,849 _5232 Pf1N1B4_5233 - tRNA-His-GTG, at 4,379,931 to 4,380,003 _5233 Position (kb) 4378 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4377.482 kb on + strand, within Pf1N1B4_3942at 4377.526 kb on + strand, within Pf1N1B4_3942at 4377.526 kb on + strand, within Pf1N1B4_3942at 4377.526 kb on + strand, within Pf1N1B4_3942at 4377.526 kb on + strand, within Pf1N1B4_3942at 4377.527 kb on - strand, within Pf1N1B4_3942at 4377.527 kb on - strandat 4377.733 kb on + strand, within Pf1N1B4_3942at 4377.919 kb on - strand, within Pf1N1B4_3942at 4377.988 kb on + strandat 4377.988 kb on + strand, within Pf1N1B4_3942at 4377.988 kb on + strand, within Pf1N1B4_3942at 4377.988 kb on + strand, within Pf1N1B4_3942at 4378.184 kb on + strandat 4378.185 kb on - strandat 4378.228 kb on - strandat 4378.228 kb on - strandat 4378.233 kb on + strandat 4378.234 kb on - strandat 4378.292 kb on + strandat 4378.293 kb on - strandat 4379.753 kb on + strandat 4379.855 kb on + strandat 4379.856 kb on - strandat 4380.007 kb on + strandat 4380.113 kb on - strandat 4380.113 kb on - strandat 4380.113 kb on - strandat 4380.113 kb on - strandat 4380.113 kb on - strandat 4380.116 kb on + strandat 4380.116 kb on + strandat 4380.116 kb on + strandat 4380.116 kb on + strandat 4380.117 kb on - strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.195 kb on + strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.196 kb on - strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.197 kb on + strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.198 kb on - strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.199 kb on + strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.200 kb on - strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.201 kb on + strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.202 kb on - strandat 4380.239 kb on - strandat 4380.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,377,482 + Pf1N1B4_3942 0.28 -1.0
4,377,526 + Pf1N1B4_3942 0.33 +1.1
4,377,526 + Pf1N1B4_3942 0.33 +0.2
4,377,526 + Pf1N1B4_3942 0.33 -0.6
4,377,526 + Pf1N1B4_3942 0.33 -0.8
4,377,527 - Pf1N1B4_3942 0.33 -0.3
4,377,527 - +1.7
4,377,733 + Pf1N1B4_3942 0.55 +0.5
4,377,919 - Pf1N1B4_3942 0.75 -1.6
4,377,988 + -0.3
4,377,988 + Pf1N1B4_3942 0.82 -1.8
4,377,988 + Pf1N1B4_3942 0.82 -0.8
4,377,988 + Pf1N1B4_3942 0.82 -1.7
4,378,184 + -0.3
4,378,185 - +0.3
4,378,228 - +1.1
4,378,228 - +0.7
4,378,233 + -0.3
4,378,234 - +1.1
4,378,292 + -0.8
4,378,293 - -0.3
4,379,753 + -0.8
4,379,855 + +0.0
4,379,856 - +0.2
4,380,007 + +0.7
4,380,113 - -0.3
4,380,113 - -0.4
4,380,113 - -0.3
4,380,113 - -0.3
4,380,113 - +1.3
4,380,116 + +0.3
4,380,116 + -0.5
4,380,116 + +2.3
4,380,116 + -1.3
4,380,117 - +0.5
4,380,195 + -0.3
4,380,195 + +0.7
4,380,195 + -0.1
4,380,195 + +0.2
4,380,195 + -0.8
4,380,195 + -1.0
4,380,195 + -1.3
4,380,196 - -1.3
4,380,196 - -3.4
4,380,196 - +0.3
4,380,196 - +1.3
4,380,196 - +0.2
4,380,196 - +0.4
4,380,196 - -1.6
4,380,196 - +2.1
4,380,196 - +0.7
4,380,196 - -1.1
4,380,196 - +1.0
4,380,196 - +0.1
4,380,196 - -0.2
4,380,196 - -1.6
4,380,196 - -0.3
4,380,196 - +1.5
4,380,197 + -1.3
4,380,197 + -2.8
4,380,197 + +2.1
4,380,197 + +0.4
4,380,197 + -0.3
4,380,197 + +0.5
4,380,197 + -0.3
4,380,197 + +0.2
4,380,197 + +1.1
4,380,197 + +0.3
4,380,198 - +0.7
4,380,198 - +0.3
4,380,198 - +0.7
4,380,198 - -1.3
4,380,198 - +0.5
4,380,198 - +0.9
4,380,198 - -2.1
4,380,198 - -0.3
4,380,198 - +0.3
4,380,198 - +1.7
4,380,198 - -0.3
4,380,198 - +1.3
4,380,198 - -0.3
4,380,198 - +1.9
4,380,198 - -0.3
4,380,198 - -1.5
4,380,198 - +1.6
4,380,198 - +0.7
4,380,198 - +0.2
4,380,198 - +0.5
4,380,198 - +0.5
4,380,198 - +0.7
4,380,199 + +0.9
4,380,199 + +0.1
4,380,199 + -0.3
4,380,199 + +0.7
4,380,199 + -0.8
4,380,199 + -0.3
4,380,199 + -0.9
4,380,199 + +0.3
4,380,200 - +0.7
4,380,200 - +0.5
4,380,200 - +1.7
4,380,200 - +1.7
4,380,200 - +0.7
4,380,200 - -0.6
4,380,200 - +0.7
4,380,200 - -3.3
4,380,200 - -0.3
4,380,200 - -1.8
4,380,200 - +1.0
4,380,200 - +0.2
4,380,200 - -0.5
4,380,200 - -0.8
4,380,200 - -1.0
4,380,201 + -0.3
4,380,201 + +0.7
4,380,201 + -1.8
4,380,201 + +0.2
4,380,201 + +0.0
4,380,201 + -0.3
4,380,201 + +0.4
4,380,201 + +0.2
4,380,201 + +0.7
4,380,201 + +1.3
4,380,201 + +0.4
4,380,201 + -1.7
4,380,201 + -1.6
4,380,202 - -0.6
4,380,202 - +0.2
4,380,202 - -1.6
4,380,202 - +0.2
4,380,202 - +0.1
4,380,202 - +1.2
4,380,202 - +0.2
4,380,239 - -1.6
4,380,239 - -1.1

Or see this region's nucleotide sequence