Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3942 and Pf1N1B4_3943 are separated by 238 nucleotides Pf1N1B4_3943 and Pf1N1B4_5230 are separated by 275 nucleotides Pf1N1B4_5230 and Pf1N1B4_5231 are separated by 35 nucleotides Pf1N1B4_5231 and Pf1N1B4_5232 are separated by 60 nucleotides Pf1N1B4_5232 and Pf1N1B4_5233 are separated by 81 nucleotides
Pf1N1B4_3942 - Murein-DD-endopeptidase (EC 3.4.99.-), at 4,377,219 to 4,378,157
_3942
Pf1N1B4_3943 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 4,378,396 to 4,379,250
_3943
Pf1N1B4_5230 - tRNA-Arg-TCT, at 4,379,526 to 4,379,599
_5230
Pf1N1B4_5231 - tRNA-His-GTG, at 4,379,635 to 4,379,707
_5231
Pf1N1B4_5232 - tRNA-Leu-TAG, at 4,379,768 to 4,379,849
_5232
Pf1N1B4_5233 - tRNA-His-GTG, at 4,379,931 to 4,380,003
_5233
Position (kb)
4378
4379
4380 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4377.482 kb on + strand, within Pf1N1B4_3942 at 4377.526 kb on + strand, within Pf1N1B4_3942 at 4377.526 kb on + strand, within Pf1N1B4_3942 at 4377.526 kb on + strand, within Pf1N1B4_3942 at 4377.526 kb on + strand, within Pf1N1B4_3942 at 4377.527 kb on - strand, within Pf1N1B4_3942 at 4377.527 kb on - strand at 4377.733 kb on + strand, within Pf1N1B4_3942 at 4377.919 kb on - strand, within Pf1N1B4_3942 at 4377.988 kb on + strand at 4377.988 kb on + strand, within Pf1N1B4_3942 at 4377.988 kb on + strand, within Pf1N1B4_3942 at 4377.988 kb on + strand, within Pf1N1B4_3942 at 4378.184 kb on + strand at 4378.185 kb on - strand at 4378.228 kb on - strand at 4378.228 kb on - strand at 4378.233 kb on + strand at 4378.234 kb on - strand at 4378.292 kb on + strand at 4378.293 kb on - strand at 4379.753 kb on + strand at 4379.855 kb on + strand at 4379.856 kb on - strand at 4380.007 kb on + strand at 4380.113 kb on - strand at 4380.113 kb on - strand at 4380.113 kb on - strand at 4380.113 kb on - strand at 4380.113 kb on - strand at 4380.116 kb on + strand at 4380.116 kb on + strand at 4380.116 kb on + strand at 4380.116 kb on + strand at 4380.117 kb on - strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.195 kb on + strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.196 kb on - strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.197 kb on + strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.198 kb on - strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.199 kb on + strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.200 kb on - strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.201 kb on + strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.202 kb on - strand at 4380.239 kb on - strand at 4380.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,377,482 + Pf1N1B4_3942 0.28 -1.0 4,377,526 + Pf1N1B4_3942 0.33 +1.1 4,377,526 + Pf1N1B4_3942 0.33 +0.2 4,377,526 + Pf1N1B4_3942 0.33 -0.6 4,377,526 + Pf1N1B4_3942 0.33 -0.8 4,377,527 - Pf1N1B4_3942 0.33 -0.3 4,377,527 - +1.7 4,377,733 + Pf1N1B4_3942 0.55 +0.5 4,377,919 - Pf1N1B4_3942 0.75 -1.6 4,377,988 + -0.3 4,377,988 + Pf1N1B4_3942 0.82 -1.8 4,377,988 + Pf1N1B4_3942 0.82 -0.8 4,377,988 + Pf1N1B4_3942 0.82 -1.7 4,378,184 + -0.3 4,378,185 - +0.3 4,378,228 - +1.1 4,378,228 - +0.7 4,378,233 + -0.3 4,378,234 - +1.1 4,378,292 + -0.8 4,378,293 - -0.3 4,379,753 + -0.8 4,379,855 + +0.0 4,379,856 - +0.2 4,380,007 + +0.7 4,380,113 - -0.3 4,380,113 - -0.4 4,380,113 - -0.3 4,380,113 - -0.3 4,380,113 - +1.3 4,380,116 + +0.3 4,380,116 + -0.5 4,380,116 + +2.3 4,380,116 + -1.3 4,380,117 - +0.5 4,380,195 + -0.3 4,380,195 + +0.7 4,380,195 + -0.1 4,380,195 + +0.2 4,380,195 + -0.8 4,380,195 + -1.0 4,380,195 + -1.3 4,380,196 - -1.3 4,380,196 - -3.4 4,380,196 - +0.3 4,380,196 - +1.3 4,380,196 - +0.2 4,380,196 - +0.4 4,380,196 - -1.6 4,380,196 - +2.1 4,380,196 - +0.7 4,380,196 - -1.1 4,380,196 - +1.0 4,380,196 - +0.1 4,380,196 - -0.2 4,380,196 - -1.6 4,380,196 - -0.3 4,380,196 - +1.5 4,380,197 + -1.3 4,380,197 + -2.8 4,380,197 + +2.1 4,380,197 + +0.4 4,380,197 + -0.3 4,380,197 + +0.5 4,380,197 + -0.3 4,380,197 + +0.2 4,380,197 + +1.1 4,380,197 + +0.3 4,380,198 - +0.7 4,380,198 - +0.3 4,380,198 - +0.7 4,380,198 - -1.3 4,380,198 - +0.5 4,380,198 - +0.9 4,380,198 - -2.1 4,380,198 - -0.3 4,380,198 - +0.3 4,380,198 - +1.7 4,380,198 - -0.3 4,380,198 - +1.3 4,380,198 - -0.3 4,380,198 - +1.9 4,380,198 - -0.3 4,380,198 - -1.5 4,380,198 - +1.6 4,380,198 - +0.7 4,380,198 - +0.2 4,380,198 - +0.5 4,380,198 - +0.5 4,380,198 - +0.7 4,380,199 + +0.9 4,380,199 + +0.1 4,380,199 + -0.3 4,380,199 + +0.7 4,380,199 + -0.8 4,380,199 + -0.3 4,380,199 + -0.9 4,380,199 + +0.3 4,380,200 - +0.7 4,380,200 - +0.5 4,380,200 - +1.7 4,380,200 - +1.7 4,380,200 - +0.7 4,380,200 - -0.6 4,380,200 - +0.7 4,380,200 - -3.3 4,380,200 - -0.3 4,380,200 - -1.8 4,380,200 - +1.0 4,380,200 - +0.2 4,380,200 - -0.5 4,380,200 - -0.8 4,380,200 - -1.0 4,380,201 + -0.3 4,380,201 + +0.7 4,380,201 + -1.8 4,380,201 + +0.2 4,380,201 + +0.0 4,380,201 + -0.3 4,380,201 + +0.4 4,380,201 + +0.2 4,380,201 + +0.7 4,380,201 + +1.3 4,380,201 + +0.4 4,380,201 + -1.7 4,380,201 + -1.6 4,380,202 - -0.6 4,380,202 - +0.2 4,380,202 - -1.6 4,380,202 - +0.2 4,380,202 - +0.1 4,380,202 - +1.2 4,380,202 - +0.2 4,380,239 - -1.6 4,380,239 - -1.1
Or see this region's nucleotide sequence