Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_365

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_364 and Pf1N1B4_365 are separated by 286 nucleotidesPf1N1B4_365 and Pf1N1B4_366 are separated by 12 nucleotidesPf1N1B4_366 and Pf1N1B4_367 are separated by 189 nucleotides Pf1N1B4_364 - Rhodanese domain protein UPF0176, at 433,048 to 433,989 _364 Pf1N1B4_365 - Cell division protein BolA, at 434,276 to 434,575 _365 Pf1N1B4_366 - FIG00954136: hypothetical protein, at 434,588 to 435,109 _366 Pf1N1B4_367 - Fumarate hydratase class II (EC 4.2.1.2), at 435,299 to 436,696 _367 Position (kb) 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.392 kb on - strand, within Pf1N1B4_364at 433.421 kb on + strand, within Pf1N1B4_364at 433.509 kb on - strand, within Pf1N1B4_364at 433.652 kb on + strand, within Pf1N1B4_364at 433.653 kb on - strand, within Pf1N1B4_364at 433.653 kb on - strand, within Pf1N1B4_364at 433.934 kb on + strandat 433.956 kb on + strandat 433.956 kb on + strandat 433.958 kb on + strandat 433.958 kb on + strandat 433.959 kb on - strandat 433.994 kb on - strandat 433.994 kb on - strandat 434.017 kb on + strandat 434.018 kb on - strandat 434.076 kb on - strandat 434.204 kb on - strandat 434.204 kb on - strandat 434.204 kb on - strandat 434.277 kb on + strandat 434.277 kb on + strandat 434.277 kb on + strandat 434.278 kb on - strandat 434.349 kb on + strand, within Pf1N1B4_365at 434.349 kb on + strand, within Pf1N1B4_365at 434.349 kb on + strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.350 kb on - strand, within Pf1N1B4_365at 434.403 kb on + strand, within Pf1N1B4_365at 434.404 kb on - strand, within Pf1N1B4_365at 434.404 kb on - strand, within Pf1N1B4_365at 434.590 kb on - strandat 434.620 kb on + strandat 434.761 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.763 kb on + strand, within Pf1N1B4_366at 434.764 kb on - strand, within Pf1N1B4_366at 434.764 kb on - strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.811 kb on + strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.812 kb on - strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strandat 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strand, within Pf1N1B4_366at 434.886 kb on + strandat 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.887 kb on - strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.967 kb on + strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 434.968 kb on - strand, within Pf1N1B4_366at 435.085 kb on + strandat 435.124 kb on + strandat 435.124 kb on + strandat 435.124 kb on + strandat 435.125 kb on - strandat 435.166 kb on - strandat 435.209 kb on + strandat 435.210 kb on - strandat 435.210 kb on - strandat 435.268 kb on - strandat 435.286 kb on + strandat 435.287 kb on - strandat 435.287 kb on - strandat 435.336 kb on + strandat 435.337 kb on - strandat 435.337 kb on - strandat 435.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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433,392 - Pf1N1B4_364 0.37 -1.6
433,421 + Pf1N1B4_364 0.40 -1.4
433,509 - Pf1N1B4_364 0.49 -1.1
433,652 + Pf1N1B4_364 0.64 +1.4
433,653 - Pf1N1B4_364 0.64 -1.1
433,653 - Pf1N1B4_364 0.64 -1.1
433,934 + -1.1
433,956 + -0.1
433,956 + -2.3
433,958 + -0.1
433,958 + -1.7
433,959 - +0.9
433,994 - -0.9
433,994 - +0.9
434,017 + -2.9
434,018 - -1.7
434,076 - -1.1
434,204 - -0.7
434,204 - +0.2
434,204 - +2.2
434,277 + -0.1
434,277 + -1.3
434,277 + +0.9
434,278 - +0.1
434,349 + Pf1N1B4_365 0.24 -2.6
434,349 + Pf1N1B4_365 0.24 -1.5
434,349 + Pf1N1B4_365 0.24 +1.6
434,350 - Pf1N1B4_365 0.25 +0.6
434,350 - Pf1N1B4_365 0.25 -0.4
434,350 - Pf1N1B4_365 0.25 -0.1
434,350 - Pf1N1B4_365 0.25 -1.5
434,350 - Pf1N1B4_365 0.25 -0.4
434,350 - Pf1N1B4_365 0.25 -0.9
434,350 - Pf1N1B4_365 0.25 -0.1
434,350 - Pf1N1B4_365 0.25 -0.9
434,350 - Pf1N1B4_365 0.25 +1.6
434,350 - Pf1N1B4_365 0.25 -0.9
434,350 - Pf1N1B4_365 0.25 -1.6
434,350 - Pf1N1B4_365 0.25 -1.1
434,350 - Pf1N1B4_365 0.25 -1.5
434,403 + Pf1N1B4_365 0.42 -0.7
434,404 - Pf1N1B4_365 0.43 -2.9
434,404 - Pf1N1B4_365 0.43 -1.1
434,590 - +2.2
434,620 + -2.3
434,761 + Pf1N1B4_366 0.33 +1.1
434,763 + Pf1N1B4_366 0.34 +1.4
434,763 + Pf1N1B4_366 0.34 +0.1
434,763 + Pf1N1B4_366 0.34 -1.7
434,763 + Pf1N1B4_366 0.34 +1.1
434,764 - Pf1N1B4_366 0.34 -0.1
434,764 - Pf1N1B4_366 0.34 +0.3
434,811 + Pf1N1B4_366 0.43 -0.4
434,811 + Pf1N1B4_366 0.43 -0.9
434,811 + Pf1N1B4_366 0.43 +0.2
434,811 + Pf1N1B4_366 0.43 -1.6
434,812 - Pf1N1B4_366 0.43 -0.4
434,812 - Pf1N1B4_366 0.43 +1.4
434,812 - Pf1N1B4_366 0.43 +0.1
434,812 - Pf1N1B4_366 0.43 -1.1
434,812 - Pf1N1B4_366 0.43 +0.3
434,812 - Pf1N1B4_366 0.43 +1.4
434,886 + Pf1N1B4_366 0.57 +1.9
434,886 + -0.1
434,886 + Pf1N1B4_366 0.57 -0.1
434,886 + Pf1N1B4_366 0.57 -0.8
434,886 + Pf1N1B4_366 0.57 -1.1
434,886 + +0.9
434,887 - Pf1N1B4_366 0.57 -1.1
434,887 - Pf1N1B4_366 0.57 +1.8
434,887 - Pf1N1B4_366 0.57 -1.1
434,887 - Pf1N1B4_366 0.57 +0.6
434,887 - Pf1N1B4_366 0.57 +1.2
434,887 - Pf1N1B4_366 0.57 -1.0
434,887 - Pf1N1B4_366 0.57 +2.0
434,887 - Pf1N1B4_366 0.57 +2.7
434,967 + Pf1N1B4_366 0.73 +1.9
434,967 + Pf1N1B4_366 0.73 +0.2
434,967 + Pf1N1B4_366 0.73 -2.6
434,967 + Pf1N1B4_366 0.73 +0.2
434,967 + Pf1N1B4_366 0.73 +2.2
434,967 + Pf1N1B4_366 0.73 -0.7
434,967 + Pf1N1B4_366 0.73 -1.5
434,967 + Pf1N1B4_366 0.73 +2.7
434,967 + Pf1N1B4_366 0.73 -0.3
434,967 + Pf1N1B4_366 0.73 -1.6
434,967 + Pf1N1B4_366 0.73 -0.1
434,967 + Pf1N1B4_366 0.73 +0.7
434,968 - Pf1N1B4_366 0.73 +2.2
434,968 - Pf1N1B4_366 0.73 +0.7
434,968 - Pf1N1B4_366 0.73 +0.9
434,968 - Pf1N1B4_366 0.73 -0.1
435,085 + -0.9
435,124 + -1.5
435,124 + -0.1
435,124 + -0.9
435,125 - +2.2
435,166 - +0.9
435,209 + +0.3
435,210 - -0.6
435,210 - -0.9
435,268 - -2.1
435,286 + -0.6
435,287 - -0.1
435,287 - +0.8
435,336 + +1.1
435,337 - -0.1
435,337 - +0.2
435,356 + -0.7

Or see this region's nucleotide sequence