Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3580 and Pf1N1B4_3581 overlap by 4 nucleotides Pf1N1B4_3581 and Pf1N1B4_3582 overlap by 11 nucleotides Pf1N1B4_3582 and Pf1N1B4_3583 are separated by 16 nucleotides Pf1N1B4_3583 and Pf1N1B4_3584 are separated by 51 nucleotides
Pf1N1B4_3580 - methyltransferase, putative, at 3,990,533 to 3,991,759
_3580
Pf1N1B4_3581 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 3,991,756 to 3,992,613
_3581
Pf1N1B4_3582 - C-methyltransferase, at 3,992,603 to 3,993,673
_3582
Pf1N1B4_3583 - Cephalosporin hydroxylase, at 3,993,690 to 3,994,427
_3583
Pf1N1B4_3584 - O-antigen biosynthesis protein, at 3,994,479 to 3,997,415
_3584
Position (kb)
3992
3993
3994 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3991.646 kb on + strand at 3991.646 kb on + strand at 3991.647 kb on - strand at 3991.647 kb on - strand at 3991.647 kb on - strand at 3991.647 kb on - strand at 3991.647 kb on - strand at 3991.704 kb on + strand at 3991.705 kb on - strand at 3991.911 kb on + strand, within Pf1N1B4_3581 at 3991.996 kb on + strand, within Pf1N1B4_3581 at 3991.996 kb on + strand, within Pf1N1B4_3581 at 3991.997 kb on - strand, within Pf1N1B4_3581 at 3992.022 kb on + strand, within Pf1N1B4_3581 at 3992.022 kb on + strand, within Pf1N1B4_3581 at 3992.023 kb on - strand, within Pf1N1B4_3581 at 3992.251 kb on + strand, within Pf1N1B4_3581 at 3992.588 kb on + strand at 3992.589 kb on - strand at 3992.589 kb on - strand at 3992.589 kb on - strand at 3992.618 kb on + strand at 3992.768 kb on + strand, within Pf1N1B4_3582 at 3992.769 kb on - strand, within Pf1N1B4_3582 at 3992.780 kb on + strand, within Pf1N1B4_3582 at 3993.039 kb on + strand, within Pf1N1B4_3582 at 3993.263 kb on + strand, within Pf1N1B4_3582 at 3993.599 kb on + strand at 3993.599 kb on + strand at 3993.600 kb on - strand at 3993.635 kb on + strand at 3993.636 kb on - strand at 3993.687 kb on - strand at 3993.817 kb on - strand at 3993.817 kb on - strand, within Pf1N1B4_3583 at 3993.817 kb on - strand, within Pf1N1B4_3583 at 3993.823 kb on - strand at 3993.957 kb on + strand, within Pf1N1B4_3583 at 3994.064 kb on + strand, within Pf1N1B4_3583 at 3994.065 kb on - strand, within Pf1N1B4_3583 at 3994.065 kb on - strand, within Pf1N1B4_3583 at 3994.200 kb on + strand, within Pf1N1B4_3583 at 3994.228 kb on - strand, within Pf1N1B4_3583 at 3994.228 kb on - strand, within Pf1N1B4_3583 at 3994.329 kb on + strand, within Pf1N1B4_3583 at 3994.330 kb on - strand, within Pf1N1B4_3583 at 3994.588 kb on - strand at 3994.590 kb on + strand at 3994.590 kb on + strand at 3994.591 kb on - strand at 3994.591 kb on - strand at 3994.591 kb on - strand at 3994.599 kb on + strand at 3994.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,991,646 + +0.5 3,991,646 + +1.0 3,991,647 - +0.3 3,991,647 - -0.5 3,991,647 - -0.1 3,991,647 - +1.7 3,991,647 - -0.7 3,991,704 + +0.0 3,991,705 - +0.2 3,991,911 + Pf1N1B4_3581 0.18 -0.1 3,991,996 + Pf1N1B4_3581 0.28 +0.1 3,991,996 + Pf1N1B4_3581 0.28 +0.2 3,991,997 - Pf1N1B4_3581 0.28 -0.9 3,992,022 + Pf1N1B4_3581 0.31 -2.1 3,992,022 + Pf1N1B4_3581 0.31 -0.1 3,992,023 - Pf1N1B4_3581 0.31 +0.5 3,992,251 + Pf1N1B4_3581 0.58 +2.7 3,992,588 + +0.3 3,992,589 - +2.7 3,992,589 - -0.1 3,992,589 - +0.5 3,992,618 + +0.6 3,992,768 + Pf1N1B4_3582 0.15 -1.3 3,992,769 - Pf1N1B4_3582 0.15 -0.9 3,992,780 + Pf1N1B4_3582 0.17 -0.5 3,993,039 + Pf1N1B4_3582 0.41 +2.2 3,993,263 + Pf1N1B4_3582 0.62 -1.4 3,993,599 + +0.2 3,993,599 + +0.4 3,993,600 - -1.7 3,993,635 + +0.5 3,993,636 - +0.7 3,993,687 - -1.9 3,993,817 - +0.5 3,993,817 - Pf1N1B4_3583 0.17 -2.7 3,993,817 - Pf1N1B4_3583 0.17 +0.5 3,993,823 - -2.1 3,993,957 + Pf1N1B4_3583 0.36 +0.9 3,994,064 + Pf1N1B4_3583 0.51 -0.1 3,994,065 - Pf1N1B4_3583 0.51 -0.3 3,994,065 - Pf1N1B4_3583 0.51 +2.2 3,994,200 + Pf1N1B4_3583 0.69 -0.1 3,994,228 - Pf1N1B4_3583 0.73 +0.6 3,994,228 - Pf1N1B4_3583 0.73 -0.6 3,994,329 + Pf1N1B4_3583 0.87 +0.3 3,994,330 - Pf1N1B4_3583 0.87 +1.0 3,994,588 - -0.4 3,994,590 + -1.1 3,994,590 + +0.6 3,994,591 - +1.0 3,994,591 - -0.4 3,994,591 - +1.1 3,994,599 + -0.4 3,994,600 - +0.3
Or see this region's nucleotide sequence