Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3484 and Pf1N1B4_3485 are separated by 486 nucleotides Pf1N1B4_3485 and Pf1N1B4_3486 are separated by 126 nucleotides Pf1N1B4_3486 and Pf1N1B4_3487 are separated by 340 nucleotides
Pf1N1B4_3484 - Sensor protein PhoQ (EC 2.7.13.3), at 3,890,692 to 3,892,038
_3484
Pf1N1B4_3485 - hypothetical protein, at 3,892,525 to 3,892,884
_3485
Pf1N1B4_3486 - Transcriptional regulator, AraC family, at 3,893,011 to 3,894,024
_3486
Pf1N1B4_3487 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate, at 3,894,365 to 3,895,699
_3487
Position (kb)
3893
3894
3895 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3892.163 kb on + strand at 3892.178 kb on - strand at 3892.194 kb on + strand at 3892.235 kb on + strand at 3892.277 kb on + strand at 3892.277 kb on + strand at 3892.277 kb on + strand at 3892.278 kb on - strand at 3892.371 kb on + strand at 3892.459 kb on + strand at 3892.474 kb on + strand at 3892.474 kb on + strand at 3892.474 kb on + strand at 3892.475 kb on + strand at 3892.475 kb on - strand at 3892.488 kb on + strand at 3892.537 kb on - strand at 3892.537 kb on - strand at 3892.627 kb on + strand, within Pf1N1B4_3485 at 3892.627 kb on + strand, within Pf1N1B4_3485 at 3892.630 kb on + strand at 3892.634 kb on + strand at 3892.634 kb on + strand, within Pf1N1B4_3485 at 3892.682 kb on - strand, within Pf1N1B4_3485 at 3892.682 kb on - strand, within Pf1N1B4_3485 at 3892.682 kb on - strand, within Pf1N1B4_3485 at 3893.147 kb on + strand, within Pf1N1B4_3486 at 3893.148 kb on - strand, within Pf1N1B4_3486 at 3893.399 kb on - strand, within Pf1N1B4_3486 at 3893.501 kb on + strand, within Pf1N1B4_3486 at 3893.718 kb on - strand, within Pf1N1B4_3486 at 3893.828 kb on + strand, within Pf1N1B4_3486 at 3893.828 kb on + strand, within Pf1N1B4_3486 at 3893.829 kb on - strand, within Pf1N1B4_3486 at 3893.829 kb on - strand, within Pf1N1B4_3486 at 3893.829 kb on - strand, within Pf1N1B4_3486 at 3894.024 kb on + strand at 3894.025 kb on - strand at 3894.177 kb on + strand at 3894.338 kb on + strand at 3894.338 kb on + strand at 3894.362 kb on - strand at 3894.362 kb on - strand at 3894.362 kb on - strand at 3894.386 kb on + strand at 3894.387 kb on - strand at 3894.388 kb on + strand at 3894.389 kb on - strand at 3894.399 kb on - strand at 3894.536 kb on - strand, within Pf1N1B4_3487 at 3894.608 kb on + strand at 3894.609 kb on - strand, within Pf1N1B4_3487 at 3894.609 kb on - strand, within Pf1N1B4_3487 at 3895.001 kb on + strand, within Pf1N1B4_3487
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,892,163 + -1.4 3,892,178 - +1.0 3,892,194 + -0.1 3,892,235 + -0.7 3,892,277 + +0.4 3,892,277 + +1.5 3,892,277 + +0.7 3,892,278 - -0.4 3,892,371 + +0.2 3,892,459 + -0.1 3,892,474 + +1.5 3,892,474 + +0.5 3,892,474 + +0.7 3,892,475 + +1.5 3,892,475 - -0.1 3,892,488 + +0.9 3,892,537 - -0.1 3,892,537 - +2.5 3,892,627 + Pf1N1B4_3485 0.28 +0.9 3,892,627 + Pf1N1B4_3485 0.28 +0.3 3,892,630 + -0.1 3,892,634 + +1.3 3,892,634 + Pf1N1B4_3485 0.30 -0.3 3,892,682 - Pf1N1B4_3485 0.44 -0.5 3,892,682 - Pf1N1B4_3485 0.44 -1.1 3,892,682 - Pf1N1B4_3485 0.44 +1.2 3,893,147 + Pf1N1B4_3486 0.13 -1.7 3,893,148 - Pf1N1B4_3486 0.14 -1.7 3,893,399 - Pf1N1B4_3486 0.38 -0.7 3,893,501 + Pf1N1B4_3486 0.48 +0.3 3,893,718 - Pf1N1B4_3486 0.70 +1.5 3,893,828 + Pf1N1B4_3486 0.81 -1.5 3,893,828 + Pf1N1B4_3486 0.81 -1.1 3,893,829 - Pf1N1B4_3486 0.81 -1.3 3,893,829 - Pf1N1B4_3486 0.81 -1.1 3,893,829 - Pf1N1B4_3486 0.81 -2.4 3,894,024 + +0.6 3,894,025 - +1.0 3,894,177 + +1.1 3,894,338 + +0.1 3,894,338 + -0.8 3,894,362 - +0.9 3,894,362 - +0.4 3,894,362 - +0.5 3,894,386 + +0.6 3,894,387 - -0.1 3,894,388 + +0.9 3,894,389 - +0.3 3,894,399 - -0.7 3,894,536 - Pf1N1B4_3487 0.13 +0.9 3,894,608 + +0.9 3,894,609 - Pf1N1B4_3487 0.18 +0.4 3,894,609 - Pf1N1B4_3487 0.18 -1.7 3,895,001 + Pf1N1B4_3487 0.48 +0.4
Or see this region's nucleotide sequence