Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3486

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3484 and Pf1N1B4_3485 are separated by 486 nucleotidesPf1N1B4_3485 and Pf1N1B4_3486 are separated by 126 nucleotidesPf1N1B4_3486 and Pf1N1B4_3487 are separated by 340 nucleotides Pf1N1B4_3484 - Sensor protein PhoQ (EC 2.7.13.3), at 3,890,692 to 3,892,038 _3484 Pf1N1B4_3485 - hypothetical protein, at 3,892,525 to 3,892,884 _3485 Pf1N1B4_3486 - Transcriptional regulator, AraC family, at 3,893,011 to 3,894,024 _3486 Pf1N1B4_3487 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate, at 3,894,365 to 3,895,699 _3487 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -2 -1 0 1 2at 3892.163 kb on + strandat 3892.178 kb on - strandat 3892.194 kb on + strandat 3892.235 kb on + strandat 3892.277 kb on + strandat 3892.277 kb on + strandat 3892.277 kb on + strandat 3892.278 kb on - strandat 3892.371 kb on + strandat 3892.459 kb on + strandat 3892.474 kb on + strandat 3892.474 kb on + strandat 3892.474 kb on + strandat 3892.475 kb on + strandat 3892.475 kb on - strandat 3892.488 kb on + strandat 3892.537 kb on - strandat 3892.537 kb on - strandat 3892.627 kb on + strand, within Pf1N1B4_3485at 3892.627 kb on + strand, within Pf1N1B4_3485at 3892.630 kb on + strandat 3892.634 kb on + strandat 3892.634 kb on + strand, within Pf1N1B4_3485at 3892.682 kb on - strand, within Pf1N1B4_3485at 3892.682 kb on - strand, within Pf1N1B4_3485at 3892.682 kb on - strand, within Pf1N1B4_3485at 3893.147 kb on + strand, within Pf1N1B4_3486at 3893.148 kb on - strand, within Pf1N1B4_3486at 3893.399 kb on - strand, within Pf1N1B4_3486at 3893.501 kb on + strand, within Pf1N1B4_3486at 3893.718 kb on - strand, within Pf1N1B4_3486at 3893.828 kb on + strand, within Pf1N1B4_3486at 3893.828 kb on + strand, within Pf1N1B4_3486at 3893.829 kb on - strand, within Pf1N1B4_3486at 3893.829 kb on - strand, within Pf1N1B4_3486at 3893.829 kb on - strand, within Pf1N1B4_3486at 3894.024 kb on + strandat 3894.025 kb on - strandat 3894.177 kb on + strandat 3894.338 kb on + strandat 3894.338 kb on + strandat 3894.362 kb on - strandat 3894.362 kb on - strandat 3894.362 kb on - strandat 3894.386 kb on + strandat 3894.387 kb on - strandat 3894.388 kb on + strandat 3894.389 kb on - strandat 3894.399 kb on - strandat 3894.536 kb on - strand, within Pf1N1B4_3487at 3894.608 kb on + strandat 3894.609 kb on - strand, within Pf1N1B4_3487at 3894.609 kb on - strand, within Pf1N1B4_3487at 3895.001 kb on + strand, within Pf1N1B4_3487

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,892,163 + -1.4
3,892,178 - +1.0
3,892,194 + -0.1
3,892,235 + -0.7
3,892,277 + +0.4
3,892,277 + +1.5
3,892,277 + +0.7
3,892,278 - -0.4
3,892,371 + +0.2
3,892,459 + -0.1
3,892,474 + +1.5
3,892,474 + +0.5
3,892,474 + +0.7
3,892,475 + +1.5
3,892,475 - -0.1
3,892,488 + +0.9
3,892,537 - -0.1
3,892,537 - +2.5
3,892,627 + Pf1N1B4_3485 0.28 +0.9
3,892,627 + Pf1N1B4_3485 0.28 +0.3
3,892,630 + -0.1
3,892,634 + +1.3
3,892,634 + Pf1N1B4_3485 0.30 -0.3
3,892,682 - Pf1N1B4_3485 0.44 -0.5
3,892,682 - Pf1N1B4_3485 0.44 -1.1
3,892,682 - Pf1N1B4_3485 0.44 +1.2
3,893,147 + Pf1N1B4_3486 0.13 -1.7
3,893,148 - Pf1N1B4_3486 0.14 -1.7
3,893,399 - Pf1N1B4_3486 0.38 -0.7
3,893,501 + Pf1N1B4_3486 0.48 +0.3
3,893,718 - Pf1N1B4_3486 0.70 +1.5
3,893,828 + Pf1N1B4_3486 0.81 -1.5
3,893,828 + Pf1N1B4_3486 0.81 -1.1
3,893,829 - Pf1N1B4_3486 0.81 -1.3
3,893,829 - Pf1N1B4_3486 0.81 -1.1
3,893,829 - Pf1N1B4_3486 0.81 -2.4
3,894,024 + +0.6
3,894,025 - +1.0
3,894,177 + +1.1
3,894,338 + +0.1
3,894,338 + -0.8
3,894,362 - +0.9
3,894,362 - +0.4
3,894,362 - +0.5
3,894,386 + +0.6
3,894,387 - -0.1
3,894,388 + +0.9
3,894,389 - +0.3
3,894,399 - -0.7
3,894,536 - Pf1N1B4_3487 0.13 +0.9
3,894,608 + +0.9
3,894,609 - Pf1N1B4_3487 0.18 +0.4
3,894,609 - Pf1N1B4_3487 0.18 -1.7
3,895,001 + Pf1N1B4_3487 0.48 +0.4

Or see this region's nucleotide sequence