Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1777 and Pf1N1B4_1778 overlap by 4 nucleotides Pf1N1B4_1778 and Pf1N1B4_1779 overlap by 9 nucleotides Pf1N1B4_1779 and Pf1N1B4_1780 are separated by 134 nucleotides Pf1N1B4_1780 and Pf1N1B4_1781 are separated by 383 nucleotides
Pf1N1B4_1777 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 2,031,376 to 2,032,278
_1777
Pf1N1B4_1778 - hypothetical protein, at 2,032,275 to 2,032,466
_1778
Pf1N1B4_1779 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 2,032,458 to 2,033,999
_1779
Pf1N1B4_1780 - FIG00961586: hypothetical protein, at 2,034,134 to 2,034,322
_1780
Pf1N1B4_1781 - hypothetical protein, at 2,034,706 to 2,035,005
_1781
Position (kb)
2032
2033
2034 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2031.462 kb on + strand at 2032.222 kb on - strand at 2032.277 kb on - strand at 2033.997 kb on + strand at 2033.997 kb on + strand at 2033.997 kb on + strand at 2033.997 kb on + strand at 2033.997 kb on + strand at 2033.998 kb on - strand at 2033.998 kb on - strand at 2033.998 kb on - strand at 2034.001 kb on + strand at 2034.080 kb on + strand at 2034.080 kb on + strand at 2034.125 kb on + strand at 2034.126 kb on - strand at 2034.135 kb on + strand at 2034.136 kb on - strand at 2034.136 kb on - strand at 2034.198 kb on + strand, within Pf1N1B4_1780 at 2034.199 kb on - strand, within Pf1N1B4_1780 at 2034.199 kb on - strand, within Pf1N1B4_1780 at 2034.199 kb on - strand, within Pf1N1B4_1780 at 2034.199 kb on - strand, within Pf1N1B4_1780 at 2034.285 kb on + strand, within Pf1N1B4_1780 at 2034.301 kb on - strand, within Pf1N1B4_1780 at 2034.349 kb on - strand at 2034.349 kb on - strand at 2034.349 kb on - strand at 2034.368 kb on + strand at 2034.452 kb on + strand at 2034.452 kb on + strand at 2034.452 kb on + strand at 2034.453 kb on - strand at 2034.517 kb on + strand at 2034.517 kb on + strand at 2034.517 kb on + strand at 2034.517 kb on + strand at 2034.567 kb on + strand at 2034.783 kb on - strand, within Pf1N1B4_1781 at 2034.967 kb on + strand, within Pf1N1B4_1781 at 2034.967 kb on + strand, within Pf1N1B4_1781 at 2034.968 kb on - strand, within Pf1N1B4_1781 at 2034.999 kb on + strand at 2034.999 kb on + strand at 2034.999 kb on + strand at 2034.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,031,462 + +1.0 2,032,222 - -1.5 2,032,277 - +0.5 2,033,997 + +0.2 2,033,997 + -1.8 2,033,997 + +0.8 2,033,997 + +1.5 2,033,997 + -0.5 2,033,998 - -0.5 2,033,998 - +0.5 2,033,998 - +0.1 2,034,001 + +2.5 2,034,080 + +1.3 2,034,080 + +1.4 2,034,125 + +1.2 2,034,126 - +0.2 2,034,135 + -0.5 2,034,136 - +0.5 2,034,136 - -1.1 2,034,198 + Pf1N1B4_1780 0.34 +0.5 2,034,199 - Pf1N1B4_1780 0.34 +0.8 2,034,199 - Pf1N1B4_1780 0.34 -0.1 2,034,199 - Pf1N1B4_1780 0.34 +3.1 2,034,199 - Pf1N1B4_1780 0.34 +0.2 2,034,285 + Pf1N1B4_1780 0.80 -1.1 2,034,301 - Pf1N1B4_1780 0.88 -2.1 2,034,349 - -0.3 2,034,349 - +1.5 2,034,349 - -0.5 2,034,368 + -1.1 2,034,452 + -0.7 2,034,452 + +1.4 2,034,452 + +1.3 2,034,453 - +0.9 2,034,517 + -0.5 2,034,517 + +0.5 2,034,517 + +1.3 2,034,517 + +0.9 2,034,567 + -0.8 2,034,783 - Pf1N1B4_1781 0.26 +0.9 2,034,967 + Pf1N1B4_1781 0.87 +0.4 2,034,967 + Pf1N1B4_1781 0.87 +0.8 2,034,968 - Pf1N1B4_1781 0.87 +0.3 2,034,999 + -0.4 2,034,999 + -0.5 2,034,999 + +1.2 2,034,999 + -1.1
Or see this region's nucleotide sequence