Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18110

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
4,519,459	+				-1.6
4,519,525	+				+0.3
4,519,530	-				-1.9
4,519,530	-				-1.0
4,519,534	+				-0.4
4,519,802	+		CA265_RS18100	0.85	-0.1
4,519,804	+		CA265_RS18100	0.86	-0.3
4,519,812	-		CA265_RS18100	0.90	+0.1
4,519,856	-				+0.1
4,519,858	+				-0.4
4,519,866	+				+0.5
4,519,883	-		CA265_RS18105	0.12	+0.0
4,519,915	-		CA265_RS18105	0.21	-0.3
4,519,945	+		CA265_RS18105	0.29	-0.2
4,519,978	+		CA265_RS18105	0.38	-0.9
4,519,979	-		CA265_RS18105	0.38	-0.5
4,519,979	-		CA265_RS18105	0.38	-0.5
4,519,979	-		CA265_RS18105	0.38	-1.2
4,520,016	-		CA265_RS18105	0.48	-0.3
4,520,024	-		CA265_RS18105	0.50	-0.3
4,520,042	+		CA265_RS18105	0.55	+0.2
4,520,043	-		CA265_RS18105	0.56	+0.6
4,520,043	-		CA265_RS18105	0.56	+0.6
4,520,044	+		CA265_RS18105	0.56	-0.1
4,520,044	+		CA265_RS18105	0.56	+0.3
4,520,044	+		CA265_RS18105	0.56	+0.5
4,520,045	-		CA265_RS18105	0.56	-0.1
4,520,045	-		CA265_RS18105	0.56	+0.1
4,520,045	-		CA265_RS18105	0.56	-2.0
4,520,045	-		CA265_RS18105	0.56	-1.9
4,520,045	-		CA265_RS18105	0.56	-0.6
4,520,047	-		CA265_RS18105	0.57	-0.5
4,520,047	-		CA265_RS18105	0.57	-0.8
4,520,047	-		CA265_RS18105	0.57	+0.1
4,520,047	-		CA265_RS18105	0.57	-0.4
4,520,086	-		CA265_RS18105	0.67	+2.8
4,520,156	-		CA265_RS18105	0.86	-0.2
4,520,160	-		CA265_RS18105	0.87	-0.9
4,520,194	+				+1.0
4,520,201	+				-0.6
4,520,230	+				+0.5
4,520,283	+				+0.6
4,520,283	+				-0.7
4,520,297	-				-0.4
4,520,329	+				-1.2
4,520,344	-				-2.4
4,520,372	-				+0.3
4,520,415	-				-0.8
4,520,434	-		CA265_RS18110	0.11	-2.4
4,520,619	+		CA265_RS18110	0.21	-0.8
4,520,619	+		CA265_RS18110	0.21	-0.0
4,520,620	-		CA265_RS18110	0.21	+1.5
4,520,620	-		CA265_RS18110	0.21	-0.5
4,520,658	+		CA265_RS18110	0.23	-1.2
4,520,658	+		CA265_RS18110	0.23	-1.1
4,520,659	-		CA265_RS18110	0.23	+1.5
4,520,659	-		CA265_RS18110	0.23	-0.8
4,520,687	-		CA265_RS18110	0.25	-0.5
4,520,762	-		CA265_RS18110	0.29	-1.2
4,520,778	+		CA265_RS18110	0.30	-0.2
4,520,779	-		CA265_RS18110	0.30	-1.4
4,520,828	+		CA265_RS18110	0.33	-2.4
4,520,938	+		CA265_RS18110	0.39	-0.6
4,520,938	+		CA265_RS18110	0.39	-0.9
4,520,951	+		CA265_RS18110	0.39	-1.4
4,520,952	-		CA265_RS18110	0.40	-0.9
4,520,968	+		CA265_RS18110	0.40	-0.8
4,520,969	-		CA265_RS18110	0.40	-1.7
4,520,991	-		CA265_RS18110	0.42	-1.9
4,521,011	+		CA265_RS18110	0.43	-0.4
4,521,011	+		CA265_RS18110	0.43	-0.3
4,521,011	+		CA265_RS18110	0.43	-0.2
4,521,011	+		CA265_RS18110	0.43	+0.2
4,521,059	-		CA265_RS18110	0.45	-0.8
4,521,108	+		CA265_RS18110	0.48	-0.3
4,521,222	-		CA265_RS18110	0.55	-0.5
4,521,299	+		CA265_RS18110	0.59	-0.4
4,521,331	+		CA265_RS18110	0.61	-0.7
4,521,331	+		CA265_RS18110	0.61	+0.3
4,521,419	+		CA265_RS18110	0.65	-0.6
4,521,419	+		CA265_RS18110	0.65	-0.3
4,521,419	+		CA265_RS18110	0.65	+0.0
4,521,420	-		CA265_RS18110	0.66	-1.3
4,521,481	-		CA265_RS18110	0.69	-0.3
4,521,544	-		CA265_RS18110	0.72	-0.9
4,521,558	+		CA265_RS18110	0.73	-0.3
4,521,583	+		CA265_RS18110	0.75	+0.5
4,521,681	-		CA265_RS18110	0.80	-0.4
4,521,742	+		CA265_RS18110	0.83	-1.3
4,521,766	+		CA265_RS18110	0.85	-1.0
4,521,767	-		CA265_RS18110	0.85	-0.7
4,521,837	+		CA265_RS18110	0.89	-0.1
4,522,042	-				+0.2
4,522,048	+				+0.6
4,522,090	-				-0.1
4,522,090	-				+0.1
4,522,106	-				+1.1
4,522,144	+				-0.2
4,522,148	-				-1.1
4,522,152	-				+0.6
4,522,155	-				-0.5
4,522,211	+				-0.2
4,522,236	+				-0.3
4,522,237	-				-0.9
4,522,240	-				-0.4
4,522,277	-		CA265_RS18115	0.14	-0.3
4,522,284	-		CA265_RS18115	0.15	+0.2
4,522,284	-		CA265_RS18115	0.15	+2.2
4,522,294	+		CA265_RS18115	0.16	+0.2
4,522,392	-		CA265_RS18115	0.26	-0.2
4,522,394	+		CA265_RS18115	0.27	+0.5
4,522,451	-		CA265_RS18115	0.33	+0.2
4,522,451	-		CA265_RS18115	0.33	-1.1
4,522,451	-		CA265_RS18115	0.33	-0.5
4,522,452	+		CA265_RS18115	0.33	+0.5
4,522,452	+		CA265_RS18115	0.33	+0.9
4,522,452	+		CA265_RS18115	0.33	+0.0
4,522,453	-		CA265_RS18115	0.33	-0.5
4,522,457	-		CA265_RS18115	0.34	-0.1
4,522,457	-		CA265_RS18115	0.34	-0.4
4,522,461	+		CA265_RS18115	0.34	+0.4
4,522,462	-		CA265_RS18115	0.34	-0.1
4,522,528	+		CA265_RS18115	0.41	+0.4
4,522,548	+		CA265_RS18115	0.43	-0.9
4,522,553	-		CA265_RS18115	0.44	+0.0
4,522,683	-		CA265_RS18115	0.58	-0.1
4,522,683	-		CA265_RS18115	0.58	+0.3
4,522,718	-		CA265_RS18115	0.62	-0.3
4,522,720	+		CA265_RS18115	0.62	-1.5
4,522,721	-		CA265_RS18115	0.62	+0.5
4,522,761	+		CA265_RS18115	0.67	-0.4
4,522,775	-		CA265_RS18115	0.68	-1.4
4,522,888	-		CA265_RS18115	0.81	-0.5
4,522,899	+		CA265_RS18115	0.82	-0.7
4,522,920	+		CA265_RS18115	0.84	+0.0
4,522,964	-		CA265_RS18115	0.89	-0.3
4,522,995	+				-0.2
4,523,027	-				+0.5
4,523,040	+				+0.4