Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08390

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
2,083,246	+		CA265_RS08385	0.43	+1.7
2,083,246	+		CA265_RS08385	0.43	+2.1
2,083,366	+		CA265_RS08385	0.50	+1.1
2,083,406	+		CA265_RS08385	0.53	+1.7
2,083,407	-		CA265_RS08385	0.53	-0.1
2,083,409	-		CA265_RS08385	0.53	-0.7
2,083,451	+		CA265_RS08385	0.56	+0.7
2,083,452	-		CA265_RS08385	0.56	-0.5
2,083,452	-		CA265_RS08385	0.56	+0.1
2,083,457	+		CA265_RS08385	0.56	+1.1
2,083,504	-		CA265_RS08385	0.59	+0.1
2,083,525	-		CA265_RS08385	0.61	-0.0
2,083,525	-		CA265_RS08385	0.61	-0.3
2,083,642	-		CA265_RS08385	0.68	+0.4
2,083,730	-		CA265_RS08385	0.74	-1.2
2,083,771	-		CA265_RS08385	0.76	+0.4
2,083,785	+		CA265_RS08385	0.77	+0.5
2,083,987	-				-0.4
2,083,987	-				-0.0
2,084,169	-				-0.4
2,084,193	+				+0.5
2,084,236	-				-0.2
2,084,278	-				-0.7
2,084,300	+		CA265_RS08390	0.11	+0.6
2,084,322	-		CA265_RS08390	0.13	+0.6
2,084,457	+		CA265_RS08390	0.28	+0.3
2,084,458	-		CA265_RS08390	0.28	+0.7
2,084,484	-		CA265_RS08390	0.31	-0.2
2,084,528	+		CA265_RS08390	0.35	+0.5
2,084,643	-		CA265_RS08390	0.48	-1.2
2,084,676	+		CA265_RS08390	0.51	+0.1
2,084,728	-		CA265_RS08390	0.57	+0.8
2,084,780	-		CA265_RS08390	0.62	+0.5
2,084,786	+		CA265_RS08390	0.63	-0.4
2,084,846	-		CA265_RS08390	0.70	+0.4
2,084,919	-		CA265_RS08390	0.77	+0.1
2,084,919	-		CA265_RS08390	0.77	+1.1
2,084,919	-		CA265_RS08390	0.77	+0.0
2,084,941	-		CA265_RS08390	0.80	-2.2
2,085,004	-		CA265_RS08390	0.86	+0.0
2,085,006	+		CA265_RS08390	0.87	+0.3
2,085,033	-		CA265_RS08390	0.90	-0.3
2,085,057	+				-0.1
2,085,057	+				+0.3
2,085,108	-				-0.2
2,085,111	+				-0.2
2,085,119	+				+1.2
2,085,126	-				-0.1
2,085,127	+				+1.0
2,085,135	+				+0.7
2,085,170	+				+0.3
2,085,273	-				-0.2
2,085,290	-				+0.6
2,085,347	+				-0.5
2,085,375	-				+0.6
2,085,378	+				-0.2
2,085,387	-				-0.2
2,085,571	+		CA265_RS08395	0.31	-1.6
2,085,581	-		CA265_RS08395	0.32	+1.6
2,085,596	-		CA265_RS08395	0.34	-0.5
2,085,644	-		CA265_RS08395	0.39	+0.4
2,085,664	-		CA265_RS08395	0.41	-2.2
2,085,720	-		CA265_RS08395	0.48	-0.3
2,085,740	+		CA265_RS08395	0.50	-0.4
2,085,741	-		CA265_RS08395	0.50	-0.1
2,085,763	-		CA265_RS08395	0.53	+0.7
2,085,776	+		CA265_RS08395	0.54	+0.4
2,085,782	+		CA265_RS08395	0.55	+0.1
2,085,798	+		CA265_RS08395	0.57	-0.2
2,085,798	+		CA265_RS08395	0.57	-1.0
2,085,842	-		CA265_RS08395	0.62	+1.2
2,085,857	+		CA265_RS08395	0.64	-0.6
2,085,858	-		CA265_RS08395	0.64	+0.5
2,085,858	-		CA265_RS08395	0.64	+1.0
2,085,863	+		CA265_RS08395	0.64	+1.4
2,085,914	+		CA265_RS08395	0.70	-0.1
2,085,947	+		CA265_RS08395	0.74	+0.0
2,085,960	-		CA265_RS08395	0.76	+0.5
2,085,978	+		CA265_RS08395	0.78	+0.3
2,086,017	-		CA265_RS08395	0.82	-0.5
2,086,054	+		CA265_RS08395	0.86	+0.9
2,086,110	-				+0.3