Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05715

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
1,388,634	-		CA265_RS05710	0.29	+0.8
1,388,634	-		CA265_RS05710	0.29	-1.0
1,388,643	-		CA265_RS05710	0.30	-0.2
1,388,644	+		CA265_RS05710	0.30	+0.2
1,388,645	-		CA265_RS05710	0.30	+0.3
1,388,775	+		CA265_RS05710	0.43	-0.1
1,388,801	-		CA265_RS05710	0.46	-0.6
1,388,836	+		CA265_RS05710	0.49	+0.6
1,388,836	+		CA265_RS05710	0.49	+0.3
1,388,901	+		CA265_RS05710	0.56	+0.8
1,388,921	+		CA265_RS05710	0.58	-0.3
1,388,962	-		CA265_RS05710	0.62	-0.2
1,388,963	+		CA265_RS05710	0.62	+0.4
1,388,963	+		CA265_RS05710	0.62	-0.8
1,388,964	-		CA265_RS05710	0.62	-0.4
1,388,964	-		CA265_RS05710	0.62	-0.9
1,388,980	+		CA265_RS05710	0.64	-0.9
1,389,003	-		CA265_RS05710	0.66	-0.7
1,389,010	+		CA265_RS05710	0.67	-0.2
1,389,010	+		CA265_RS05710	0.67	-0.6
1,389,011	-		CA265_RS05710	0.67	+0.5
1,389,011	-		CA265_RS05710	0.67	+0.4
1,389,038	+		CA265_RS05710	0.69	+1.0
1,389,066	+		CA265_RS05710	0.72	+0.4
1,389,133	-		CA265_RS05710	0.79	+0.5
1,389,182	+		CA265_RS05710	0.84	+0.7
1,389,248	-				-0.6
1,389,257	-				-0.1
1,389,257	-				-0.4
1,389,282	+				-0.8
1,389,299	-				-0.4
1,389,318	+				-0.4
1,389,372	-				-0.6
1,389,373	+				+0.3
1,389,403	-				+1.4
1,389,418	+				-0.3
1,389,419	+				+0.3
1,389,419	+				-0.2
1,389,437	-				-0.1
1,389,439	+				+0.5
1,389,440	-				-1.1
1,389,465	-				-0.1
1,389,487	-				+0.1
1,389,527	+		CA265_RS05715	0.11	-0.5
1,389,611	-		CA265_RS05715	0.18	+0.2
1,389,627	-		CA265_RS05715	0.19	-0.3
1,389,660	+		CA265_RS05715	0.22	+0.7
1,389,688	-		CA265_RS05715	0.24	+1.4
1,389,737	+		CA265_RS05715	0.28	+0.5
1,389,740	-		CA265_RS05715	0.29	+0.3
1,389,870	-		CA265_RS05715	0.39	-0.3
1,389,874	-		CA265_RS05715	0.39	-0.7
1,389,874	-		CA265_RS05715	0.39	-0.3
1,389,884	+		CA265_RS05715	0.40	-0.2
1,389,884	+		CA265_RS05715	0.40	+0.1
1,389,908	+		CA265_RS05715	0.42	-0.2
1,389,945	-		CA265_RS05715	0.45	+0.6
1,390,011	-		CA265_RS05715	0.50	-0.1
1,390,029	-		CA265_RS05715	0.52	-0.6
1,390,051	-		CA265_RS05715	0.54	+0.2
1,390,099	-		CA265_RS05715	0.57	-0.2
1,390,123	-		CA265_RS05715	0.59	+0.3
1,390,127	+		CA265_RS05715	0.60	+0.1
1,390,194	+		CA265_RS05715	0.65	-0.2
1,390,194	+		CA265_RS05715	0.65	-0.4
1,390,330	-		CA265_RS05715	0.76	-0.2
1,390,330	-		CA265_RS05715	0.76	+0.2
1,390,362	+		CA265_RS05715	0.79	+0.4
1,390,433	-		CA265_RS05715	0.84	-0.3
1,390,468	+		CA265_RS05715	0.87	-1.6
1,390,469	-		CA265_RS05715	0.87	+0.1
1,390,624	+				-1.0
1,390,630	-				-0.0
1,390,630	-				+1.9
1,390,632	+				-1.3
1,390,661	-				-0.6
1,390,734	+				-0.2
1,390,758	-				+0.7
1,390,793	+				-0.6
1,390,798	+				-0.8
1,390,810	+				-1.0
1,390,810	+				-1.0
1,390,876	+				-0.8
1,390,877	-				-0.1
1,390,882	-				-0.7
1,390,920	+				-1.3
1,390,928	+				-0.5
1,391,117	+				-0.8
1,391,301	+				-0.3
1,391,302	-				+3.8
1,391,341	+				-0.0
1,391,386	-				+3.5
1,391,428	-				+6.1
1,391,517	+		CA265_RS05720	0.11	-0.7
1,391,552	+		CA265_RS05720	0.13	-1.6
1,391,552	+		CA265_RS05720	0.13	-0.4
1,391,595	+		CA265_RS05720	0.15	-1.3
1,391,617	-		CA265_RS05720	0.16	+4.2
1,391,617	-		CA265_RS05720	0.16	+4.1