Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02785 and AO353_02790 are separated by 184 nucleotides AO353_02790 and AO353_02795 are separated by 119 nucleotides AO353_02795 and AO353_02800 are separated by 145 nucleotides
AO353_02785: AO353_02785 - hypothetical protein, at 590,268 to 590,870
_02785
AO353_02790: AO353_02790 - Zn-dependent metalloprotease, at 591,055 to 591,549
_02790
AO353_02795: AO353_02795 - carnitine dehydratase, at 591,669 to 592,850
_02795
AO353_02800: AO353_02800 - C4-dicarboxylate transporter, at 592,996 to 594,330
_02800
Position (kb) 591
592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 590.697 kb on + strand, within AO353_02785 at 590.698 kb on - strand, within AO353_02785 at 590.706 kb on + strand, within AO353_02785 at 590.706 kb on + strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.707 kb on - strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.715 kb on + strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.716 kb on - strand, within AO353_02785 at 590.859 kb on + strand at 590.859 kb on + strand at 590.859 kb on + strand at 590.859 kb on + strand at 590.860 kb on - strand at 590.860 kb on - strand at 590.860 kb on - strand at 590.862 kb on - strand at 590.862 kb on - strand at 590.868 kb on + strand at 590.868 kb on + strand at 590.869 kb on - strand at 590.869 kb on - strand at 590.869 kb on - strand at 590.869 kb on - strand at 590.869 kb on - strand at 590.869 kb on - strand at 590.882 kb on + strand at 590.882 kb on + strand at 590.883 kb on - strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.917 kb on + strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.918 kb on - strand at 590.919 kb on + strand at 590.919 kb on + strand at 590.919 kb on + strand at 590.919 kb on + strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.920 kb on - strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.921 kb on + strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.922 kb on - strand at 590.969 kb on + strand at 590.969 kb on + strand at 590.969 kb on + strand at 591.026 kb on + strand at 591.027 kb on - strand at 591.027 kb on - strand at 591.027 kb on - strand at 591.305 kb on + strand, within AO353_02790 at 591.306 kb on - strand, within AO353_02790 at 591.306 kb on - strand, within AO353_02790 at 591.306 kb on - strand, within AO353_02790 at 591.349 kb on + strand, within AO353_02790 at 591.350 kb on - strand, within AO353_02790 at 591.350 kb on - strand, within AO353_02790 at 591.350 kb on - strand, within AO353_02790 at 591.350 kb on - strand, within AO353_02790 at 591.350 kb on - strand, within AO353_02790 at 591.379 kb on + strand, within AO353_02790 at 591.379 kb on + strand, within AO353_02790 at 591.379 kb on + strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.380 kb on - strand, within AO353_02790 at 591.410 kb on - strand, within AO353_02790 at 591.415 kb on + strand, within AO353_02790 at 591.415 kb on + strand, within AO353_02790 at 591.416 kb on - strand, within AO353_02790 at 591.416 kb on - strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.490 kb on + strand, within AO353_02790 at 591.491 kb on - strand, within AO353_02790 at 591.491 kb on - strand, within AO353_02790 at 591.491 kb on - strand, within AO353_02790 at 591.671 kb on - strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.674 kb on + strand at 591.675 kb on - strand at 591.675 kb on - strand at 591.675 kb on - strand at 591.675 kb on - strand at 591.675 kb on - strand at 591.717 kb on - strand at 591.747 kb on - strand at 591.770 kb on + strand at 591.770 kb on + strand at 591.771 kb on - strand at 591.771 kb on - strand at 591.849 kb on + strand, within AO353_02795 at 591.850 kb on - strand, within AO353_02795 at 592.139 kb on - strand, within AO353_02795 at 592.141 kb on + strand, within AO353_02795 at 592.141 kb on + strand, within AO353_02795 at 592.142 kb on - strand, within AO353_02795 at 592.142 kb on - strand, within AO353_02795 at 592.142 kb on - strand, within AO353_02795 at 592.147 kb on + strand, within AO353_02795 at 592.147 kb on + strand, within AO353_02795 at 592.148 kb on - strand, within AO353_02795 at 592.148 kb on - strand, within AO353_02795 at 592.398 kb on - strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.399 kb on + strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.400 kb on - strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.426 kb on + strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.427 kb on - strand, within AO353_02795 at 592.456 kb on + strand, within AO353_02795 at 592.457 kb on - strand, within AO353_02795 at 592.457 kb on - strand, within AO353_02795 at 592.492 kb on + strand, within AO353_02795 at 592.492 kb on + strand, within AO353_02795 at 592.493 kb on - strand, within AO353_02795 at 592.493 kb on - strand, within AO353_02795 at 592.493 kb on - strand, within AO353_02795 at 592.528 kb on + strand, within AO353_02795 at 592.528 kb on + strand, within AO353_02795 at 592.529 kb on - strand, within AO353_02795 at 592.669 kb on + strand, within AO353_02795 at 592.688 kb on + strand, within AO353_02795 at 592.689 kb on - strand, within AO353_02795 at 592.689 kb on - strand, within AO353_02795 at 592.874 kb on + strand at 592.875 kb on - strand at 592.875 kb on - strand at 592.875 kb on - strand at 592.875 kb on - strand at 592.875 kb on - strand at 592.875 kb on - strand at 592.882 kb on - strand at 592.882 kb on - strand at 592.912 kb on + strand at 592.913 kb on - strand at 592.955 kb on + strand at 592.997 kb on + strand at 592.997 kb on + strand at 592.997 kb on + strand at 592.998 kb on - strand at 592.998 kb on - strand at 593.055 kb on + strand at 593.055 kb on + strand at 593.055 kb on + strand at 593.055 kb on + strand at 593.056 kb on - strand at 593.402 kb on + strand, within AO353_02800 at 593.402 kb on + strand, within AO353_02800 at 593.402 kb on + strand, within AO353_02800 at 593.402 kb on + strand, within AO353_02800 at 593.402 kb on + strand, within AO353_02800 at 593.402 kb on + strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.403 kb on - strand, within AO353_02800 at 593.529 kb on + strand, within AO353_02800 at 593.530 kb on - strand, within AO353_02800 at 593.561 kb on + strand, within AO353_02800 at 593.561 kb on + strand, within AO353_02800 at 593.562 kb on - strand, within AO353_02800 at 593.562 kb on - strand, within AO353_02800 at 593.562 kb on - strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.645 kb on + strand, within AO353_02800 at 593.646 kb on - strand, within AO353_02800 at 593.646 kb on - strand, within AO353_02800 at 593.646 kb on - strand, within AO353_02800 at 593.646 kb on - strand, within AO353_02800 at 593.646 kb on - strand, within AO353_02800 at 593.693 kb on + strand, within AO353_02800 at 593.816 kb on + strand, within AO353_02800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 590,697 + AO353_02785 0.71 +3.3 590,698 - AO353_02785 0.71 -0.6 590,706 + AO353_02785 0.73 -0.6 590,706 + AO353_02785 0.73 -1.7 590,707 - AO353_02785 0.73 -1.3 590,707 - AO353_02785 0.73 -0.8 590,707 - AO353_02785 0.73 -0.5 590,707 - AO353_02785 0.73 +0.3 590,707 - AO353_02785 0.73 +1.3 590,707 - AO353_02785 0.73 +0.3 590,707 - AO353_02785 0.73 -0.1 590,715 + AO353_02785 0.74 -0.3 590,715 + AO353_02785 0.74 +0.3 590,715 + AO353_02785 0.74 -0.5 590,715 + AO353_02785 0.74 -0.0 590,715 + AO353_02785 0.74 +1.0 590,715 + AO353_02785 0.74 -0.1 590,715 + AO353_02785 0.74 +1.6 590,715 + AO353_02785 0.74 +0.2 590,716 - AO353_02785 0.74 -1.7 590,716 - AO353_02785 0.74 -0.8 590,716 - AO353_02785 0.74 -0.2 590,716 - AO353_02785 0.74 +0.0 590,716 - AO353_02785 0.74 -1.0 590,716 - AO353_02785 0.74 -0.1 590,859 + +0.5 590,859 + +1.3 590,859 + +0.4 590,859 + +0.0 590,860 - +0.2 590,860 - +0.7 590,860 - -0.1 590,862 - -0.1 590,862 - -0.1 590,868 + +0.2 590,868 + -1.3 590,869 - -1.1 590,869 - +0.2 590,869 - -2.2 590,869 - -1.3 590,869 - +1.2 590,869 - +0.1 590,882 + +0.5 590,882 + +2.7 590,883 - +0.5 590,917 + +1.9 590,917 + +0.4 590,917 + -0.6 590,917 + +1.7 590,917 + +0.4 590,917 + +0.3 590,917 + +0.7 590,917 + -1.0 590,918 - +1.1 590,918 - +0.5 590,918 - -0.3 590,918 - +0.9 590,918 - -0.4 590,918 - +1.3 590,918 - -0.6 590,918 - -0.7 590,918 - +0.7 590,919 + -0.7 590,919 + +1.6 590,919 + -2.3 590,919 + -0.6 590,920 - +0.9 590,920 - -0.7 590,920 - +1.0 590,920 - +0.1 590,920 - -0.7 590,920 - -0.3 590,920 - -0.7 590,920 - -0.6 590,920 - -0.0 590,920 - -0.0 590,920 - -0.6 590,920 - -1.2 590,921 + +0.2 590,921 + -0.3 590,921 + +2.2 590,921 + +0.1 590,921 + +0.0 590,921 + -0.4 590,921 + +1.2 590,921 + +0.7 590,921 + -0.3 590,921 + -1.3 590,921 + +0.5 590,921 + +0.2 590,921 + +0.7 590,921 + -0.6 590,921 + -0.4 590,921 + +0.2 590,921 + -0.8 590,922 - +2.2 590,922 - -0.1 590,922 - +0.7 590,922 - -0.6 590,922 - -0.1 590,922 - -1.1 590,922 - +0.2 590,922 - -0.4 590,969 + -0.1 590,969 + -0.6 590,969 + +0.4 591,026 + -0.6 591,027 - -0.4 591,027 - -2.4 591,027 - +0.7 591,305 + AO353_02790 0.51 +0.2 591,306 - AO353_02790 0.51 +1.3 591,306 - AO353_02790 0.51 -0.6 591,306 - AO353_02790 0.51 +0.2 591,349 + AO353_02790 0.59 -2.2 591,350 - AO353_02790 0.60 -0.1 591,350 - AO353_02790 0.60 +4.3 591,350 - AO353_02790 0.60 -0.3 591,350 - AO353_02790 0.60 +0.2 591,350 - AO353_02790 0.60 +0.7 591,379 + AO353_02790 0.65 +0.2 591,379 + AO353_02790 0.65 +0.4 591,379 + AO353_02790 0.65 -1.8 591,380 - AO353_02790 0.66 +0.7 591,380 - AO353_02790 0.66 -0.3 591,380 - AO353_02790 0.66 +0.7 591,380 - AO353_02790 0.66 -0.1 591,380 - AO353_02790 0.66 -0.1 591,380 - AO353_02790 0.66 +0.2 591,410 - AO353_02790 0.72 -0.1 591,415 + AO353_02790 0.73 -0.1 591,415 + AO353_02790 0.73 +2.2 591,416 - AO353_02790 0.73 +0.7 591,416 - AO353_02790 0.73 -1.1 591,490 + AO353_02790 0.88 +0.8 591,490 + AO353_02790 0.88 +0.0 591,490 + AO353_02790 0.88 +1.2 591,490 + AO353_02790 0.88 +0.5 591,490 + AO353_02790 0.88 +0.6 591,490 + AO353_02790 0.88 -1.8 591,490 + AO353_02790 0.88 -1.1 591,491 - AO353_02790 0.88 +1.4 591,491 - AO353_02790 0.88 +0.4 591,491 - AO353_02790 0.88 -0.5 591,671 - +0.7 591,674 + +0.2 591,674 + -0.8 591,674 + +0.3 591,674 + +0.0 591,674 + +0.1 591,674 + -0.6 591,674 + +0.4 591,675 - +0.4 591,675 - -0.3 591,675 - -0.4 591,675 - +1.1 591,675 - -1.4 591,717 - +2.5 591,747 - -0.3 591,770 + +0.6 591,770 + -1.2 591,771 - +0.6 591,771 - +0.1 591,849 + AO353_02795 0.15 +0.1 591,850 - AO353_02795 0.15 -1.1 592,139 - AO353_02795 0.40 +0.9 592,141 + AO353_02795 0.40 +1.7 592,141 + AO353_02795 0.40 -0.6 592,142 - AO353_02795 0.40 +0.2 592,142 - AO353_02795 0.40 -1.4 592,142 - AO353_02795 0.40 +0.2 592,147 + AO353_02795 0.40 -0.0 592,147 + AO353_02795 0.40 +1.7 592,148 - AO353_02795 0.41 -1.7 592,148 - AO353_02795 0.41 +0.2 592,398 - AO353_02795 0.62 -0.1 592,399 + AO353_02795 0.62 -0.4 592,399 + AO353_02795 0.62 +1.1 592,399 + AO353_02795 0.62 -1.2 592,399 + AO353_02795 0.62 -0.3 592,399 + AO353_02795 0.62 +0.7 592,399 + AO353_02795 0.62 +0.9 592,400 - AO353_02795 0.62 +0.3 592,400 - AO353_02795 0.62 +0.3 592,400 - AO353_02795 0.62 +0.5 592,400 - AO353_02795 0.62 -0.8 592,400 - AO353_02795 0.62 -1.8 592,400 - AO353_02795 0.62 +1.7 592,400 - AO353_02795 0.62 -0.2 592,400 - AO353_02795 0.62 -0.1 592,426 + AO353_02795 0.64 -1.5 592,426 + AO353_02795 0.64 -0.2 592,426 + AO353_02795 0.64 +0.5 592,426 + AO353_02795 0.64 +0.2 592,426 + AO353_02795 0.64 -0.3 592,426 + AO353_02795 0.64 +1.1 592,426 + AO353_02795 0.64 +0.5 592,426 + AO353_02795 0.64 +1.3 592,426 + AO353_02795 0.64 -0.6 592,426 + AO353_02795 0.64 -1.3 592,426 + AO353_02795 0.64 -0.4 592,427 - AO353_02795 0.64 +0.7 592,427 - AO353_02795 0.64 +1.7 592,427 - AO353_02795 0.64 +0.2 592,427 - AO353_02795 0.64 -0.1 592,427 - AO353_02795 0.64 +0.1 592,427 - AO353_02795 0.64 +2.0 592,427 - AO353_02795 0.64 +0.2 592,427 - AO353_02795 0.64 +0.1 592,427 - AO353_02795 0.64 -0.9 592,427 - AO353_02795 0.64 -0.6 592,456 + AO353_02795 0.67 +0.3 592,457 - AO353_02795 0.67 -0.2 592,457 - AO353_02795 0.67 -0.6 592,492 + AO353_02795 0.70 +0.3 592,492 + AO353_02795 0.70 -0.8 592,493 - AO353_02795 0.70 -0.8 592,493 - AO353_02795 0.70 -0.7 592,493 - AO353_02795 0.70 -0.6 592,528 + AO353_02795 0.73 -0.8 592,528 + AO353_02795 0.73 +1.0 592,529 - AO353_02795 0.73 +0.7 592,669 + AO353_02795 0.85 +1.2 592,688 + AO353_02795 0.86 +0.2 592,689 - AO353_02795 0.86 +1.7 592,689 - AO353_02795 0.86 +1.0 592,874 + +0.5 592,875 - +0.2 592,875 - +0.7 592,875 - -0.0 592,875 - +0.4 592,875 - -0.6 592,875 - +0.6 592,882 - -0.7 592,882 - +3.1 592,912 + -0.3 592,913 - -0.7 592,955 + -0.3 592,997 + -0.7 592,997 + +1.5 592,997 + +0.2 592,998 - -0.4 592,998 - -2.0 593,055 + -1.8 593,055 + -0.4 593,055 + -2.4 593,055 + -0.6 593,056 - -0.3 593,402 + AO353_02800 0.30 -0.9 593,402 + AO353_02800 0.30 -1.3 593,402 + AO353_02800 0.30 -1.3 593,402 + AO353_02800 0.30 -1.0 593,402 + AO353_02800 0.30 +0.4 593,402 + AO353_02800 0.30 -1.3 593,403 - AO353_02800 0.30 -0.2 593,403 - AO353_02800 0.30 +0.7 593,403 - AO353_02800 0.30 +0.9 593,403 - AO353_02800 0.30 +2.3 593,403 - AO353_02800 0.30 +0.6 593,403 - AO353_02800 0.30 -0.0 593,529 + AO353_02800 0.40 +0.4 593,530 - AO353_02800 0.40 +0.7 593,561 + AO353_02800 0.42 +0.5 593,561 + AO353_02800 0.42 +0.5 593,562 - AO353_02800 0.42 +0.5 593,562 - AO353_02800 0.42 +0.6 593,562 - AO353_02800 0.42 +0.7 593,645 + AO353_02800 0.49 +0.6 593,645 + AO353_02800 0.49 +0.6 593,645 + AO353_02800 0.49 +0.2 593,645 + AO353_02800 0.49 -1.3 593,645 + AO353_02800 0.49 +0.1 593,645 + AO353_02800 0.49 +0.9 593,646 - AO353_02800 0.49 +0.4 593,646 - AO353_02800 0.49 -0.2 593,646 - AO353_02800 0.49 +0.9 593,646 - AO353_02800 0.49 +0.5 593,646 - AO353_02800 0.49 +0.7 593,693 + AO353_02800 0.52 +1.3 593,816 + AO353_02800 0.61 -0.8
Or see this region's nucleotide sequence