Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3788

Experiment: sodium fluoride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 200 mM
4,548,172	+		Shewana3_3787	0.35	-0.4
4,548,180	+		Shewana3_3787	0.36	-0.3
4,548,180	+		Shewana3_3787	0.36	-0.2
4,548,180	-		Shewana3_3787	0.36	-1.4
4,548,188	-		Shewana3_3787	0.36	+0.2
4,548,188	-		Shewana3_3787	0.36	-0.1
4,548,188	-		Shewana3_3787	0.36	+0.1
4,548,193	-		Shewana3_3787	0.37	-1.2
4,548,302	+		Shewana3_3787	0.44	+0.1
4,548,314	+		Shewana3_3787	0.45	+0.1
4,548,314	+		Shewana3_3787	0.45	-0.5
4,548,314	+		Shewana3_3787	0.45	+0.0
4,548,322	-		Shewana3_3787	0.46	-0.4
4,548,347	+		Shewana3_3787	0.47	+0.3
4,548,356	-		Shewana3_3787	0.48	-0.5
4,548,375	+		Shewana3_3787	0.49	+0.1
4,548,383	-		Shewana3_3787	0.50	-0.0
4,548,403	+		Shewana3_3787	0.51	+0.1
4,548,403	-		Shewana3_3787	0.51	-0.6
4,548,419	+		Shewana3_3787	0.53	-0.2
4,548,458	+		Shewana3_3787	0.55	+0.0
4,548,468	+		Shewana3_3787	0.56	+0.0
4,548,468	+		Shewana3_3787	0.56	-0.2
4,548,468	+		Shewana3_3787	0.56	-0.6
4,548,468	+		Shewana3_3787	0.56	+0.3
4,548,468	+		Shewana3_3787	0.56	-0.3
4,548,476	-		Shewana3_3787	0.57	-0.6
4,548,476	-		Shewana3_3787	0.57	-0.1
4,548,476	-		Shewana3_3787	0.57	-0.2
4,548,476	-		Shewana3_3787	0.57	+0.0
4,548,485	+		Shewana3_3787	0.57	+0.3
4,548,487	+		Shewana3_3787	0.57	+0.1
4,548,492	+		Shewana3_3787	0.58	+0.5
4,548,495	-		Shewana3_3787	0.58	-1.6
4,548,560	+		Shewana3_3787	0.62	+0.7
4,548,568	-		Shewana3_3787	0.63	-1.2
4,548,568	-		Shewana3_3787	0.63	-0.4
4,548,640	+		Shewana3_3787	0.68	-0.6
4,548,648	-		Shewana3_3787	0.69	-0.2
4,548,689	+		Shewana3_3787	0.71	+0.1
4,548,712	+		Shewana3_3787	0.73	+0.2
4,548,712	+		Shewana3_3787	0.73	-0.9
4,548,719	+		Shewana3_3787	0.74	-0.5
4,548,719	+		Shewana3_3787	0.74	-0.0
4,548,720	-		Shewana3_3787	0.74	-0.4
4,548,720	-		Shewana3_3787	0.74	+0.2
4,548,720	-		Shewana3_3787	0.74	-2.3
4,548,809	+		Shewana3_3787	0.80	-0.2
4,548,809	+		Shewana3_3787	0.80	-0.4
4,548,817	-		Shewana3_3787	0.80	-0.1
4,548,880	+		Shewana3_3787	0.85	+0.2
4,548,903	+		Shewana3_3787	0.86	+0.1
4,548,903	+		Shewana3_3787	0.86	-0.3
4,548,911	-		Shewana3_3787	0.87	+0.1
4,548,911	-		Shewana3_3787	0.87	-0.5
4,548,911	-		Shewana3_3787	0.87	-1.0
4,548,936	+		Shewana3_3787	0.89	-0.4
4,548,944	-		Shewana3_3787	0.89	-0.5
4,548,945	+		Shewana3_3787	0.89	-0.4
4,548,955	-				-0.1
4,548,996	+				+0.4
4,549,004	-				-1.0
4,549,004	-				-0.3
4,549,004	-				-0.3
4,549,012	-				+0.8
4,549,027	+				+0.0
4,549,048	-				-0.2
4,549,059	+				-0.4
4,549,086	-				-0.7
4,549,185	-				-0.2
4,549,195	-				-0.4
4,549,243	+				-0.2
4,549,251	-				-0.1
4,549,251	-				-1.4
4,549,251	-				-0.9
4,549,256	-				+0.2
4,549,270	+				+0.3
4,549,278	+				+0.1
4,549,293	-				-0.7
4,549,318	+				+0.4
4,549,318	-				-0.3
4,549,346	-				-0.3
4,549,357	+				-0.2
4,549,357	+				+0.1
4,549,357	+				+0.0
4,549,456	+		Shewana3_3788	0.10	-0.1
4,549,462	+		Shewana3_3788	0.11	-0.1
4,549,467	+		Shewana3_3788	0.11	+0.3
4,549,478	-		Shewana3_3788	0.11	+0.2
4,549,524	-		Shewana3_3788	0.12	-0.5
4,549,619	+		Shewana3_3788	0.15	-0.6
4,549,619	+		Shewana3_3788	0.15	+1.4
4,549,627	-		Shewana3_3788	0.15	-1.0
4,549,630	+		Shewana3_3788	0.15	+0.0
4,549,722	-		Shewana3_3788	0.18	+0.1
4,549,722	-		Shewana3_3788	0.18	-0.2
4,549,818	-		Shewana3_3788	0.21	+0.1
4,549,823	+		Shewana3_3788	0.21	+0.8
4,549,943	+		Shewana3_3788	0.25	+0.2
4,549,943	+		Shewana3_3788	0.25	-0.6
4,549,978	-		Shewana3_3788	0.26	-1.1
4,550,003	+		Shewana3_3788	0.26	-0.6
4,550,011	-		Shewana3_3788	0.27	+0.2
4,550,070	+		Shewana3_3788	0.28	-1.2
4,550,078	-		Shewana3_3788	0.28	-0.5
4,550,078	-		Shewana3_3788	0.28	-0.4
4,550,081	+		Shewana3_3788	0.29	-0.9
4,550,088	+		Shewana3_3788	0.29	-1.0
4,550,148	+		Shewana3_3788	0.31	-0.7
4,550,301	+		Shewana3_3788	0.35	+0.2
4,550,315	-		Shewana3_3788	0.35	+0.2
4,550,315	-		Shewana3_3788	0.35	-0.1
4,550,327	+		Shewana3_3788	0.36	+0.0
4,550,329	+		Shewana3_3788	0.36	-0.3
4,550,337	-		Shewana3_3788	0.36	-0.7
4,550,348	+		Shewana3_3788	0.36	-0.7
4,550,348	+		Shewana3_3788	0.36	-0.8
4,550,348	+		Shewana3_3788	0.36	-0.1
4,550,348	+		Shewana3_3788	0.36	+0.2
4,550,356	-		Shewana3_3788	0.37	-0.4
4,550,356	-		Shewana3_3788	0.37	-0.0
4,550,356	-		Shewana3_3788	0.37	-0.6
4,550,364	-		Shewana3_3788	0.37	-0.1
4,550,391	-		Shewana3_3788	0.38	+0.6
4,550,468	-		Shewana3_3788	0.40	+1.1
4,550,534	+		Shewana3_3788	0.42	-0.6
4,550,544	+		Shewana3_3788	0.42	-0.4
4,550,552	-		Shewana3_3788	0.42	-0.5
4,550,589	-		Shewana3_3788	0.43	+0.2
4,550,647	-		Shewana3_3788	0.45	-0.1
4,550,662	-		Shewana3_3788	0.45	+0.3
4,550,662	-		Shewana3_3788	0.45	+0.9
4,550,785	-		Shewana3_3788	0.49	-1.2
4,550,873	-		Shewana3_3788	0.52	-0.2
4,550,873	-		Shewana3_3788	0.52	-0.1
4,550,901	+		Shewana3_3788	0.52	-0.4
4,550,948	+		Shewana3_3788	0.54	-0.2
4,551,000	+		Shewana3_3788	0.55	-0.2
4,551,025	+		Shewana3_3788	0.56	-0.3
4,551,025	+		Shewana3_3788	0.56	-0.3
4,551,063	+		Shewana3_3788	0.57	-0.9
4,551,117	-		Shewana3_3788	0.59	+0.2
4,551,119	+		Shewana3_3788	0.59	-0.2
4,551,137	+		Shewana3_3788	0.59	-0.3
4,551,209	+		Shewana3_3788	0.61	-0.0
4,551,256	-		Shewana3_3788	0.63	-0.5
4,551,256	-		Shewana3_3788	0.63	-0.1
4,551,256	-		Shewana3_3788	0.63	+0.1
4,551,256	-		Shewana3_3788	0.63	+0.1
4,551,279	-		Shewana3_3788	0.63	-0.1
4,551,300	+		Shewana3_3788	0.64	-0.1
4,551,341	+		Shewana3_3788	0.65	+0.1
4,551,351	+		Shewana3_3788	0.65	+0.1
4,551,369	-		Shewana3_3788	0.66	-1.2
4,551,702	+		Shewana3_3788	0.76	-1.4
4,551,710	-		Shewana3_3788	0.76	-0.1
4,551,710	-		Shewana3_3788	0.76	+0.4
4,552,028	+		Shewana3_3788	0.85	-0.1
4,552,050	+		Shewana3_3788	0.86	-0.7
4,552,164	-		Shewana3_3788	0.89	-1.7
4,552,173	+		Shewana3_3788	0.89	-0.1
4,552,195	-		Shewana3_3788	0.90	+0.0
4,552,294	+				+0.1
4,552,356	+				+0.3
4,552,356	+				-0.2
4,552,356	+				-0.3
4,552,356	+				-0.1
4,552,356	+				-0.5
4,552,356	+				-0.1
4,552,356	+				+0.3
4,552,364	-				-0.4
4,552,364	-				-0.6
4,552,364	-				-0.1
4,552,364	-				+0.1
4,552,364	-				-0.1
4,552,364	-				-0.2
4,552,492	-				-0.5
4,552,692	+		Shewana3_3789	0.17	+0.3
4,552,770	+		Shewana3_3789	0.28	+0.3
4,552,770	+		Shewana3_3789	0.28	-0.6
4,552,778	-		Shewana3_3789	0.29	-0.0
4,552,836	-		Shewana3_3789	0.38	+0.0
4,552,994	-		Shewana3_3789	0.60	-0.1
4,553,193	+		Shewana3_3789	0.88	-0.4
4,553,201	-		Shewana3_3789	0.89	+0.4
4,553,457	+				-1.7
4,553,475	+				+0.2