Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2848 and Shewana3_2849 are separated by 85 nucleotides Shewana3_2849 and Shewana3_2850 are separated by 253 nucleotides
Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317
_2848
Shewana3_2849: Shewana3_2849 - sigma-54 dependent trancsriptional regulator (RefSeq), at 3,410,403 to 3,411,812
_2849
Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542
_2850
Position (kb)
3410
3411
3412 Strain fitness (log2 ratio)
-1
0
1 at 3409.662 kb on - strand, within Shewana3_2848 at 3409.714 kb on - strand, within Shewana3_2848 at 3409.923 kb on + strand, within Shewana3_2848 at 3409.931 kb on - strand, within Shewana3_2848 at 3409.946 kb on + strand, within Shewana3_2848 at 3409.954 kb on - strand, within Shewana3_2848 at 3410.139 kb on + strand, within Shewana3_2848 at 3411.010 kb on - strand, within Shewana3_2849 at 3411.027 kb on - strand, within Shewana3_2849 at 3411.182 kb on - strand, within Shewana3_2849 at 3411.284 kb on - strand, within Shewana3_2849 at 3411.357 kb on - strand, within Shewana3_2849 at 3411.474 kb on + strand, within Shewana3_2849 at 3411.687 kb on - strand at 3411.750 kb on - strand at 3411.760 kb on - strand at 3411.824 kb on - strand at 3411.851 kb on - strand at 3412.049 kb on - strand at 3412.395 kb on - strand, within Shewana3_2850 at 3412.423 kb on - strand, within Shewana3_2850 at 3412.459 kb on + strand, within Shewana3_2850 at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 3,409,662 - Shewana3_2848 0.61 -1.0 3,409,714 - Shewana3_2848 0.64 -0.7 3,409,923 + Shewana3_2848 0.77 -0.3 3,409,931 - Shewana3_2848 0.77 +0.0 3,409,946 + Shewana3_2848 0.78 -1.5 3,409,954 - Shewana3_2848 0.79 +0.4 3,410,139 + Shewana3_2848 0.89 -0.5 3,411,010 - Shewana3_2849 0.43 +0.4 3,411,027 - Shewana3_2849 0.44 +1.3 3,411,182 - Shewana3_2849 0.55 -0.2 3,411,284 - Shewana3_2849 0.62 +0.1 3,411,357 - Shewana3_2849 0.68 -0.0 3,411,474 + Shewana3_2849 0.76 +0.6 3,411,687 - -1.1 3,411,750 - -1.5 3,411,760 - -0.8 3,411,824 - +0.8 3,411,851 - -0.2 3,412,049 - +0.2 3,412,395 - Shewana3_2850 0.69 +0.1 3,412,423 - Shewana3_2850 0.75 +0.8 3,412,459 + Shewana3_2850 0.82 -0.3 3,412,514 + -0.0 3,412,514 + +0.1 3,412,514 + +0.0
Or see this region's nucleotide sequence