Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2289 and Shewana3_2290 overlap by 1 nucleotides Shewana3_2290 and Shewana3_2291 are separated by 127 nucleotides Shewana3_2291 and Shewana3_2292 are separated by 596 nucleotides
Shewana3_2289: Shewana3_2289 - transcription-repair coupling factor (RefSeq), at 2,750,925 to 2,754,407
_2289
Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432
_2290
Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832
_2291
Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968
_2292
Position (kb)
2754
2755
2756 Strain fitness (log2 ratio)
-2
-1
0
1 at 2753.660 kb on + strand, within Shewana3_2289 at 2753.828 kb on - strand, within Shewana3_2289 at 2754.103 kb on + strand at 2754.336 kb on + strand at 2754.407 kb on + strand at 2754.853 kb on - strand, within Shewana3_2290 at 2754.863 kb on + strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2755.164 kb on + strand, within Shewana3_2290 at 2755.256 kb on + strand, within Shewana3_2290 at 2755.258 kb on + strand, within Shewana3_2290 at 2755.368 kb on + strand at 2755.613 kb on + strand, within Shewana3_2291 at 2755.641 kb on - strand, within Shewana3_2291 at 2756.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 2,753,660 + Shewana3_2289 0.79 -0.5 2,753,828 - Shewana3_2289 0.83 -0.5 2,754,103 + +0.4 2,754,336 + -0.4 2,754,407 + -0.0 2,754,853 - Shewana3_2290 0.43 +1.6 2,754,863 + Shewana3_2290 0.44 -0.5 2,754,871 - Shewana3_2290 0.45 +0.6 2,754,871 - Shewana3_2290 0.45 +1.6 2,755,164 + Shewana3_2290 0.74 +0.6 2,755,256 + Shewana3_2290 0.83 -0.9 2,755,258 + Shewana3_2290 0.83 +0.4 2,755,368 + -2.1 2,755,613 + Shewana3_2291 0.19 +1.6 2,755,641 - Shewana3_2291 0.30 +0.4 2,756,335 + +1.6
Or see this region's nucleotide sequence