Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2175 and Shewana3_2176 overlap by 4 nucleotides Shewana3_2176 and Shewana3_2177 are separated by 110 nucleotides
Shewana3_2175: Shewana3_2175 - phage integrase family protein (RefSeq), at 2,607,529 to 2,608,851
_2175
Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494
_2176
Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809
_2177
Position (kb)
2608
2609
2610
2611 Strain fitness (log2 ratio)
-2
-1
0
1 at 2607.982 kb on - strand, within Shewana3_2175 at 2608.280 kb on + strand, within Shewana3_2175 at 2608.473 kb on + strand, within Shewana3_2175 at 2608.815 kb on + strand at 2608.831 kb on + strand at 2608.833 kb on + strand at 2608.841 kb on - strand at 2609.421 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.505 kb on + strand, within Shewana3_2176 at 2609.537 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.700 kb on + strand, within Shewana3_2176 at 2610.021 kb on + strand, within Shewana3_2176 at 2610.134 kb on + strand, within Shewana3_2176 at 2610.142 kb on - strand, within Shewana3_2176 at 2610.298 kb on - strand, within Shewana3_2176 at 2610.578 kb on + strand at 2610.639 kb on - strand at 2610.719 kb on + strand at 2610.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 2,607,982 - Shewana3_2175 0.34 +1.7 2,608,280 + Shewana3_2175 0.57 +0.1 2,608,473 + Shewana3_2175 0.71 +0.1 2,608,815 + +0.1 2,608,831 + -0.3 2,608,833 + +1.7 2,608,841 - -0.3 2,609,421 + Shewana3_2176 0.35 +1.7 2,609,505 + Shewana3_2176 0.40 -0.9 2,609,505 + Shewana3_2176 0.40 -0.6 2,609,537 - Shewana3_2176 0.42 -0.6 2,609,667 - Shewana3_2176 0.50 -0.3 2,609,667 - Shewana3_2176 0.50 +1.1 2,609,667 - Shewana3_2176 0.50 +1.7 2,609,700 + Shewana3_2176 0.52 +0.7 2,610,021 + Shewana3_2176 0.71 -1.8 2,610,134 + Shewana3_2176 0.78 +0.7 2,610,142 - Shewana3_2176 0.79 +0.7 2,610,298 - Shewana3_2176 0.88 +0.0 2,610,578 + +0.7 2,610,639 - +0.1 2,610,719 + +1.7 2,610,809 + +0.1
Or see this region's nucleotide sequence