Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2062

Experiment: sodium fluoride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2061 and Shewana3_2062 are separated by 106 nucleotidesShewana3_2062 and Shewana3_R0088 are separated by 80 nucleotidesShewana3_R0088 and Shewana3_2063 are separated by 403 nucleotides Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845 _2061 Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223 _2062 Shewana3_R0088: Shewana3_R0088 - tRNA-Ser (RefSeq), at 2,469,304 to 2,469,394 _R0088 Shewana3_2063: Shewana3_2063 - hypothetical protein (RefSeq), at 2,469,798 to 2,470,328 _2063 Position (kb) 2467 2468 2469 2470Strain fitness (log2 ratio) -1 0 1at 2467.140 kb on + strand, within Shewana3_2061at 2467.411 kb on + strand, within Shewana3_2061at 2467.555 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061at 2468.141 kb on + strand, within Shewana3_2062at 2468.304 kb on + strand, within Shewana3_2062at 2468.625 kb on + strand, within Shewana3_2062at 2468.785 kb on + strand, within Shewana3_2062at 2468.796 kb on + strand, within Shewana3_2062at 2469.071 kb on + strand, within Shewana3_2062at 2469.553 kb on + strandat 2469.869 kb on - strand, within Shewana3_2063at 2470.007 kb on + strand, within Shewana3_2063at 2470.037 kb on + strand, within Shewana3_2063at 2470.196 kb on - strand, within Shewana3_2063at 2470.220 kb on + strand, within Shewana3_2063

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 200 mM
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2,467,140 + Shewana3_2061 0.23 +0.7
2,467,411 + Shewana3_2061 0.52 -0.6
2,467,555 - Shewana3_2061 0.68 +1.0
2,467,668 - Shewana3_2061 0.80 +0.8
2,467,668 - Shewana3_2061 0.80 +1.1
2,468,141 + Shewana3_2062 0.15 +0.9
2,468,304 + Shewana3_2062 0.28 +1.5
2,468,625 + Shewana3_2062 0.53 +0.5
2,468,785 + Shewana3_2062 0.65 -0.6
2,468,796 + Shewana3_2062 0.66 +0.9
2,469,071 + Shewana3_2062 0.88 +0.5
2,469,553 + +0.8
2,469,869 - Shewana3_2063 0.13 +0.8
2,470,007 + Shewana3_2063 0.39 +0.1
2,470,037 + Shewana3_2063 0.45 +0.7
2,470,196 - Shewana3_2063 0.75 -0.8
2,470,220 + Shewana3_2063 0.79 +0.1

Or see this region's nucleotide sequence