Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1146 and Shewana3_1147 are separated by 99 nucleotides Shewana3_1147 and Shewana3_1148 overlap by 4 nucleotides Shewana3_1148 and Shewana3_1149 are separated by 1 nucleotides Shewana3_1149 and Shewana3_1150 are separated by 423 nucleotides
Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767
_1146
Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217
_1147
Shewana3_1148: Shewana3_1148 - PepSY-associated TM helix domain-containing protein (RefSeq), at 1,354,214 to 1,355,896
_1148
Shewana3_1149: Shewana3_1149 - hypothetical protein (RefSeq), at 1,355,898 to 1,356,266
_1149
Shewana3_1150: Shewana3_1150 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,356,690 to 1,358,258
_1150
Position (kb)
1354
1355
1356 Strain fitness (log2 ratio)
-1
0
1 at 1353.509 kb on + strand, within Shewana3_1146 at 1353.581 kb on - strand, within Shewana3_1146 at 1353.797 kb on - strand at 1353.841 kb on + strand at 1353.892 kb on + strand at 1353.897 kb on + strand at 1354.022 kb on - strand, within Shewana3_1147 at 1354.165 kb on - strand, within Shewana3_1147 at 1354.229 kb on + strand at 1354.410 kb on - strand, within Shewana3_1148 at 1354.570 kb on + strand, within Shewana3_1148 at 1354.578 kb on - strand, within Shewana3_1148 at 1354.880 kb on - strand, within Shewana3_1148 at 1354.972 kb on + strand, within Shewana3_1148 at 1355.336 kb on + strand, within Shewana3_1148 at 1355.339 kb on - strand, within Shewana3_1148 at 1355.339 kb on - strand, within Shewana3_1148 at 1355.675 kb on - strand, within Shewana3_1148 at 1355.687 kb on + strand, within Shewana3_1148 at 1355.695 kb on - strand, within Shewana3_1148 at 1355.774 kb on - strand at 1355.911 kb on + strand at 1355.911 kb on + strand at 1355.912 kb on + strand at 1355.919 kb on - strand at 1355.919 kb on - strand at 1355.919 kb on - strand at 1355.929 kb on - strand at 1355.953 kb on - strand, within Shewana3_1149 at 1356.165 kb on - strand, within Shewana3_1149 at 1356.345 kb on - strand at 1356.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 1,353,509 + Shewana3_1146 0.41 +1.2 1,353,581 - Shewana3_1146 0.57 +0.1 1,353,797 - -0.3 1,353,841 + -0.1 1,353,892 + +1.5 1,353,897 + +0.5 1,354,022 - Shewana3_1147 0.44 +0.7 1,354,165 - Shewana3_1147 0.85 +0.3 1,354,229 + +0.5 1,354,410 - Shewana3_1148 0.12 +0.8 1,354,570 + Shewana3_1148 0.21 -1.1 1,354,578 - Shewana3_1148 0.22 +0.2 1,354,880 - Shewana3_1148 0.40 +1.2 1,354,972 + Shewana3_1148 0.45 +1.5 1,355,336 + Shewana3_1148 0.67 +0.5 1,355,339 - Shewana3_1148 0.67 +0.8 1,355,339 - Shewana3_1148 0.67 +0.9 1,355,675 - Shewana3_1148 0.87 +0.7 1,355,687 + Shewana3_1148 0.88 -1.1 1,355,695 - Shewana3_1148 0.88 +0.3 1,355,774 - -0.8 1,355,911 + -0.3 1,355,911 + +0.3 1,355,912 + -1.1 1,355,919 - -0.1 1,355,919 - +0.6 1,355,919 - +0.7 1,355,929 - -0.4 1,355,953 - Shewana3_1149 0.15 +0.4 1,356,165 - Shewana3_1149 0.72 +0.7 1,356,345 - +0.9 1,356,791 - +0.1
Or see this region's nucleotide sequence