Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0421

Experiment: sodium fluoride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0420 and Shewana3_0421 are separated by 46 nucleotidesShewana3_0421 and Shewana3_0422 are separated by 604 nucleotides Shewana3_0420: Shewana3_0420 - O-antigen polymerase (RefSeq), at 478,842 to 480,278 _0420 Shewana3_0421: Shewana3_0421 - methylation site containing protein (RefSeq), at 480,325 to 480,753 _0421 Shewana3_0422: Shewana3_0422 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (RefSeq), at 481,358 to 482,239 _0422 Position (kb) 480 481Strain fitness (log2 ratio) -2 -1 0 1 2at 479.328 kb on + strand, within Shewana3_0420at 479.375 kb on + strand, within Shewana3_0420at 479.451 kb on + strand, within Shewana3_0420at 479.452 kb on + strand, within Shewana3_0420at 479.458 kb on + strand, within Shewana3_0420at 479.458 kb on + strand, within Shewana3_0420at 479.459 kb on - strand, within Shewana3_0420at 479.459 kb on - strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.473 kb on + strand, within Shewana3_0420at 479.479 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420at 479.481 kb on - strand, within Shewana3_0420at 479.538 kb on - strand, within Shewana3_0420at 479.538 kb on - strand, within Shewana3_0420at 479.579 kb on - strand, within Shewana3_0420at 479.579 kb on - strand, within Shewana3_0420at 479.613 kb on + strand, within Shewana3_0420at 479.615 kb on + strand, within Shewana3_0420at 479.625 kb on + strand, within Shewana3_0420at 479.633 kb on - strand, within Shewana3_0420at 479.638 kb on - strand, within Shewana3_0420at 479.689 kb on + strand, within Shewana3_0420at 479.689 kb on + strand, within Shewana3_0420at 479.689 kb on + strand, within Shewana3_0420at 479.689 kb on + strand, within Shewana3_0420at 479.697 kb on - strand, within Shewana3_0420at 479.719 kb on - strand, within Shewana3_0420at 479.736 kb on + strand, within Shewana3_0420at 479.736 kb on + strand, within Shewana3_0420at 479.739 kb on - strand, within Shewana3_0420at 479.745 kb on + strand, within Shewana3_0420at 479.745 kb on + strand, within Shewana3_0420at 479.751 kb on + strand, within Shewana3_0420at 479.751 kb on + strand, within Shewana3_0420at 479.753 kb on - strand, within Shewana3_0420at 479.753 kb on - strand, within Shewana3_0420at 479.753 kb on - strand, within Shewana3_0420at 479.753 kb on - strand, within Shewana3_0420at 479.753 kb on - strand, within Shewana3_0420at 479.759 kb on - strand, within Shewana3_0420at 479.759 kb on - strand, within Shewana3_0420at 479.760 kb on + strand, within Shewana3_0420at 479.767 kb on + strand, within Shewana3_0420at 479.777 kb on + strand, within Shewana3_0420at 479.777 kb on + strand, within Shewana3_0420at 479.783 kb on + strand, within Shewana3_0420at 479.785 kb on - strand, within Shewana3_0420at 479.789 kb on + strand, within Shewana3_0420at 479.790 kb on + strand, within Shewana3_0420at 479.791 kb on - strand, within Shewana3_0420at 479.791 kb on - strand, within Shewana3_0420at 479.791 kb on - strand, within Shewana3_0420at 479.791 kb on - strand, within Shewana3_0420at 479.795 kb on + strand, within Shewana3_0420at 479.798 kb on - strand, within Shewana3_0420at 479.798 kb on - strand, within Shewana3_0420at 479.811 kb on + strand, within Shewana3_0420at 479.811 kb on + strand, within Shewana3_0420at 479.811 kb on + strand, within Shewana3_0420at 479.811 kb on + strand, within Shewana3_0420at 479.819 kb on - strand, within Shewana3_0420at 479.823 kb on + strand, within Shewana3_0420at 479.839 kb on + strand, within Shewana3_0420at 479.847 kb on - strand, within Shewana3_0420at 479.853 kb on + strand, within Shewana3_0420at 479.853 kb on + strand, within Shewana3_0420at 479.853 kb on + strand, within Shewana3_0420at 479.861 kb on - strand, within Shewana3_0420at 479.880 kb on - strand, within Shewana3_0420at 479.888 kb on - strand, within Shewana3_0420at 479.908 kb on + strand, within Shewana3_0420at 479.937 kb on - strand, within Shewana3_0420at 479.937 kb on - strand, within Shewana3_0420at 479.939 kb on + strand, within Shewana3_0420at 479.973 kb on - strand, within Shewana3_0420at 479.982 kb on + strand, within Shewana3_0420at 479.982 kb on + strand, within Shewana3_0420at 479.982 kb on + strand, within Shewana3_0420at 479.989 kb on - strand, within Shewana3_0420at 479.990 kb on - strand, within Shewana3_0420at 479.990 kb on - strand, within Shewana3_0420at 479.996 kb on + strand, within Shewana3_0420at 479.996 kb on - strand, within Shewana3_0420at 480.004 kb on - strand, within Shewana3_0420at 480.004 kb on - strand, within Shewana3_0420at 480.015 kb on - strand, within Shewana3_0420at 480.017 kb on - strand, within Shewana3_0420at 480.022 kb on + strand, within Shewana3_0420at 480.022 kb on + strand, within Shewana3_0420at 480.023 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.030 kb on - strand, within Shewana3_0420at 480.044 kb on + strand, within Shewana3_0420at 480.047 kb on - strand, within Shewana3_0420at 480.047 kb on - strand, within Shewana3_0420at 480.052 kb on - strand, within Shewana3_0420at 480.078 kb on + strand, within Shewana3_0420at 480.086 kb on - strand, within Shewana3_0420at 480.086 kb on - strand, within Shewana3_0420at 480.090 kb on + strand, within Shewana3_0420at 480.116 kb on + strand, within Shewana3_0420at 480.150 kb on - strandat 480.198 kb on - strandat 480.215 kb on + strandat 480.215 kb on + strandat 480.223 kb on - strandat 480.223 kb on - strandat 480.223 kb on - strandat 480.226 kb on + strandat 480.317 kb on + strandat 480.345 kb on - strandat 480.386 kb on + strand, within Shewana3_0421at 480.394 kb on + strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.427 kb on + strand, within Shewana3_0421at 480.441 kb on - strand, within Shewana3_0421at 480.443 kb on + strand, within Shewana3_0421at 480.449 kb on - strand, within Shewana3_0421at 480.450 kb on - strand, within Shewana3_0421at 480.463 kb on + strand, within Shewana3_0421at 480.471 kb on - strand, within Shewana3_0421at 480.540 kb on + strand, within Shewana3_0421at 480.550 kb on + strand, within Shewana3_0421at 480.558 kb on - strand, within Shewana3_0421at 480.560 kb on + strand, within Shewana3_0421at 480.594 kb on + strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.711 kb on + strandat 480.712 kb on + strandat 480.718 kb on + strandat 480.719 kb on - strandat 480.719 kb on - strandat 480.721 kb on - strandat 480.721 kb on - strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.768 kb on - strandat 480.768 kb on - strandat 480.768 kb on - strandat 480.770 kb on - strandat 480.793 kb on + strandat 480.806 kb on - strandat 480.906 kb on - strandat 480.929 kb on - strandat 481.060 kb on - strandat 481.081 kb on + strandat 481.089 kb on - strandat 481.114 kb on + strandat 481.282 kb on - strandat 481.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 200 mM
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479,328 + Shewana3_0420 0.34 +0.1
479,375 + Shewana3_0420 0.37 -0.2
479,451 + Shewana3_0420 0.42 -0.0
479,452 + Shewana3_0420 0.42 +0.2
479,458 + Shewana3_0420 0.43 +0.4
479,458 + Shewana3_0420 0.43 +0.1
479,459 - Shewana3_0420 0.43 -0.6
479,459 - Shewana3_0420 0.43 -0.2
479,473 + Shewana3_0420 0.44 -0.8
479,473 + Shewana3_0420 0.44 -0.2
479,473 + Shewana3_0420 0.44 -0.1
479,479 - Shewana3_0420 0.44 -0.3
479,481 - Shewana3_0420 0.44 -0.8
479,481 - Shewana3_0420 0.44 -0.1
479,481 - Shewana3_0420 0.44 -1.1
479,538 - Shewana3_0420 0.48 +0.7
479,538 - Shewana3_0420 0.48 +0.3
479,579 - Shewana3_0420 0.51 -0.7
479,579 - Shewana3_0420 0.51 -0.3
479,613 + Shewana3_0420 0.54 -0.3
479,615 + Shewana3_0420 0.54 -0.1
479,625 + Shewana3_0420 0.54 +0.3
479,633 - Shewana3_0420 0.55 -0.6
479,638 - Shewana3_0420 0.55 -1.5
479,689 + Shewana3_0420 0.59 -0.1
479,689 + Shewana3_0420 0.59 +0.0
479,689 + Shewana3_0420 0.59 +0.5
479,689 + Shewana3_0420 0.59 -0.1
479,697 - Shewana3_0420 0.59 +0.0
479,719 - Shewana3_0420 0.61 -0.1
479,736 + Shewana3_0420 0.62 -1.7
479,736 + Shewana3_0420 0.62 -0.1
479,739 - Shewana3_0420 0.62 -0.3
479,745 + Shewana3_0420 0.63 -0.3
479,745 + Shewana3_0420 0.63 +1.0
479,751 + Shewana3_0420 0.63 -0.3
479,751 + Shewana3_0420 0.63 +0.2
479,753 - Shewana3_0420 0.63 +0.3
479,753 - Shewana3_0420 0.63 +2.0
479,753 - Shewana3_0420 0.63 -0.3
479,753 - Shewana3_0420 0.63 -0.2
479,753 - Shewana3_0420 0.63 -0.6
479,759 - Shewana3_0420 0.64 +0.3
479,759 - Shewana3_0420 0.64 -0.2
479,760 + Shewana3_0420 0.64 +0.1
479,767 + Shewana3_0420 0.64 -0.3
479,777 + Shewana3_0420 0.65 +0.2
479,777 + Shewana3_0420 0.65 +0.1
479,783 + Shewana3_0420 0.65 -0.2
479,785 - Shewana3_0420 0.66 -1.0
479,789 + Shewana3_0420 0.66 -0.6
479,790 + Shewana3_0420 0.66 -0.3
479,791 - Shewana3_0420 0.66 +0.1
479,791 - Shewana3_0420 0.66 +0.2
479,791 - Shewana3_0420 0.66 +0.4
479,791 - Shewana3_0420 0.66 +0.6
479,795 + Shewana3_0420 0.66 -0.1
479,798 - Shewana3_0420 0.67 +0.1
479,798 - Shewana3_0420 0.67 -0.3
479,811 + Shewana3_0420 0.67 -0.3
479,811 + Shewana3_0420 0.67 +0.5
479,811 + Shewana3_0420 0.67 -0.3
479,811 + Shewana3_0420 0.67 -0.3
479,819 - Shewana3_0420 0.68 -0.4
479,823 + Shewana3_0420 0.68 +0.2
479,839 + Shewana3_0420 0.69 -0.0
479,847 - Shewana3_0420 0.70 +0.1
479,853 + Shewana3_0420 0.70 +0.3
479,853 + Shewana3_0420 0.70 +0.1
479,853 + Shewana3_0420 0.70 +0.2
479,861 - Shewana3_0420 0.71 +0.9
479,880 - Shewana3_0420 0.72 -0.3
479,888 - Shewana3_0420 0.73 +0.6
479,908 + Shewana3_0420 0.74 -0.1
479,937 - Shewana3_0420 0.76 -0.4
479,937 - Shewana3_0420 0.76 -0.4
479,939 + Shewana3_0420 0.76 -0.1
479,973 - Shewana3_0420 0.79 -0.7
479,982 + Shewana3_0420 0.79 +0.0
479,982 + Shewana3_0420 0.79 +0.6
479,982 + Shewana3_0420 0.79 +0.1
479,989 - Shewana3_0420 0.80 -0.4
479,990 - Shewana3_0420 0.80 +0.2
479,990 - Shewana3_0420 0.80 -0.9
479,996 + Shewana3_0420 0.80 -0.3
479,996 - Shewana3_0420 0.80 +0.6
480,004 - Shewana3_0420 0.81 -0.0
480,004 - Shewana3_0420 0.81 +0.2
480,015 - Shewana3_0420 0.82 -0.4
480,017 - Shewana3_0420 0.82 +0.2
480,022 + Shewana3_0420 0.82 -0.1
480,022 + Shewana3_0420 0.82 +0.0
480,023 - Shewana3_0420 0.82 -0.1
480,030 - Shewana3_0420 0.83 +0.1
480,030 - Shewana3_0420 0.83 -0.4
480,030 - Shewana3_0420 0.83 -0.3
480,030 - Shewana3_0420 0.83 +0.6
480,030 - Shewana3_0420 0.83 -0.1
480,030 - Shewana3_0420 0.83 +0.1
480,044 + Shewana3_0420 0.84 -0.6
480,047 - Shewana3_0420 0.84 +0.0
480,047 - Shewana3_0420 0.84 -1.2
480,052 - Shewana3_0420 0.84 -0.1
480,078 + Shewana3_0420 0.86 -0.2
480,086 - Shewana3_0420 0.87 -0.4
480,086 - Shewana3_0420 0.87 -0.4
480,090 + Shewana3_0420 0.87 -0.9
480,116 + Shewana3_0420 0.89 -0.6
480,150 - -0.2
480,198 - -1.7
480,215 + -0.1
480,215 + -0.9
480,223 - -0.4
480,223 - +0.3
480,223 - +0.6
480,226 + +0.0
480,317 + +0.1
480,345 - +0.2
480,386 + Shewana3_0421 0.14 -1.0
480,394 + Shewana3_0421 0.16 -0.6
480,394 - Shewana3_0421 0.16 +0.5
480,394 - Shewana3_0421 0.16 -1.3
480,394 - Shewana3_0421 0.16 -1.6
480,394 - Shewana3_0421 0.16 +0.4
480,394 - Shewana3_0421 0.16 -0.0
480,394 - Shewana3_0421 0.16 +0.5
480,401 + Shewana3_0421 0.18 +0.0
480,401 + Shewana3_0421 0.18 -0.9
480,401 + Shewana3_0421 0.18 +1.6
480,409 - Shewana3_0421 0.20 -0.3
480,409 - Shewana3_0421 0.20 -0.0
480,409 - Shewana3_0421 0.20 +0.1
480,427 + Shewana3_0421 0.24 -0.4
480,441 - Shewana3_0421 0.27 -0.7
480,443 + Shewana3_0421 0.28 +2.6
480,449 - Shewana3_0421 0.29 -0.2
480,450 - Shewana3_0421 0.29 -1.6
480,463 + Shewana3_0421 0.32 +0.4
480,471 - Shewana3_0421 0.34 -0.0
480,540 + Shewana3_0421 0.50 -0.2
480,550 + Shewana3_0421 0.52 +0.1
480,558 - Shewana3_0421 0.54 -0.9
480,560 + Shewana3_0421 0.55 +0.1
480,594 + Shewana3_0421 0.63 +0.6
480,661 - Shewana3_0421 0.78 +0.2
480,661 - Shewana3_0421 0.78 +0.2
480,661 - Shewana3_0421 0.78 +0.0
480,661 - Shewana3_0421 0.78 +0.1
480,711 + -0.1
480,712 + +0.2
480,718 + +0.8
480,719 - +0.6
480,719 - +0.1
480,721 - +0.1
480,721 - -0.1
480,760 + -0.2
480,760 + +0.0
480,760 + +0.1
480,760 + -0.3
480,760 + +0.4
480,760 + +0.0
480,760 + +0.5
480,768 - +0.1
480,768 - +0.4
480,768 - +0.4
480,770 - +0.4
480,793 + +0.3
480,806 - +0.2
480,906 - -0.8
480,929 - -2.2
481,060 - +0.5
481,081 + -0.3
481,089 - +0.0
481,114 + -0.0
481,282 - -2.5
481,314 - +0.3

Or see this region's nucleotide sequence