Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0096

Experiment: sodium fluoride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0095 and Shewana3_0096 are separated by 269 nucleotidesShewana3_0096 and Shewana3_0097 are separated by 35 nucleotides Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278 _0095 Shewana3_0096: Shewana3_0096 - MarR family transcriptional regulator (RefSeq), at 107,548 to 107,976 _0096 Shewana3_0097: Shewana3_0097 - FAD-binding 9, siderophore-interacting domain-containing protein (RefSeq), at 108,012 to 108,758 _0097 Position (kb) 107 108Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 106.559 kb on + strand, within Shewana3_0095at 106.724 kb on + strand, within Shewana3_0095at 106.797 kb on + strand, within Shewana3_0095at 106.909 kb on + strand, within Shewana3_0095at 106.932 kb on + strand, within Shewana3_0095at 106.945 kb on - strand, within Shewana3_0095at 106.964 kb on - strand, within Shewana3_0095at 106.977 kb on + strand, within Shewana3_0095at 107.060 kb on - strand, within Shewana3_0095at 107.068 kb on + strand, within Shewana3_0095at 107.076 kb on - strand, within Shewana3_0095at 107.111 kb on - strandat 107.111 kb on - strandat 107.166 kb on + strandat 107.174 kb on - strandat 107.197 kb on + strandat 107.203 kb on + strandat 107.330 kb on - strandat 107.572 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.582 kb on + strandat 107.693 kb on - strand, within Shewana3_0096at 107.759 kb on + strand, within Shewana3_0096at 107.838 kb on + strand, within Shewana3_0096at 107.987 kb on + strandat 108.027 kb on - strandat 108.027 kb on - strandat 108.075 kb on - strandat 108.158 kb on + strand, within Shewana3_0097at 108.166 kb on - strand, within Shewana3_0097at 108.187 kb on + strand, within Shewana3_0097at 108.425 kb on + strand, within Shewana3_0097at 108.433 kb on - strand, within Shewana3_0097at 108.433 kb on - strand, within Shewana3_0097at 108.470 kb on - strand, within Shewana3_0097at 108.531 kb on + strand, within Shewana3_0097at 108.538 kb on - strand, within Shewana3_0097at 108.584 kb on - strand, within Shewana3_0097at 108.653 kb on - strand, within Shewana3_0097at 108.762 kb on - strandat 108.816 kb on + strandat 108.826 kb on + strandat 108.826 kb on + strandat 108.834 kb on - strandat 108.834 kb on - strandat 108.834 kb on - strandat 108.850 kb on - strandat 108.894 kb on + strandat 108.894 kb on + strandat 108.901 kb on + strandat 108.902 kb on - strandat 108.902 kb on - strandat 108.909 kb on - strandat 108.936 kb on + strandat 108.936 kb on + strandat 108.936 kb on + strandat 108.944 kb on - strandat 108.944 kb on - strandat 108.944 kb on - strandat 108.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 200 mM
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106,559 + Shewana3_0095 0.62 -0.5
106,724 + Shewana3_0095 0.71 +0.2
106,797 + Shewana3_0095 0.75 -0.2
106,909 + Shewana3_0095 0.81 +0.3
106,932 + Shewana3_0095 0.82 +0.8
106,945 - Shewana3_0095 0.82 -0.2
106,964 - Shewana3_0095 0.83 +0.5
106,977 + Shewana3_0095 0.84 -0.3
107,060 - Shewana3_0095 0.89 +0.0
107,068 + Shewana3_0095 0.89 -1.1
107,076 - Shewana3_0095 0.89 -0.2
107,111 - -0.4
107,111 - +0.4
107,166 + -0.3
107,174 - -0.4
107,197 + -1.5
107,203 + +0.2
107,330 - -0.3
107,572 + -0.9
107,582 + -0.3
107,582 + -0.4
107,582 + -1.4
107,582 + -0.6
107,693 - Shewana3_0096 0.34 -0.3
107,759 + Shewana3_0096 0.49 -2.2
107,838 + Shewana3_0096 0.68 -5.4
107,987 + +0.3
108,027 - -0.1
108,027 - +0.1
108,075 - +0.1
108,158 + Shewana3_0097 0.20 +0.2
108,166 - Shewana3_0097 0.21 -0.0
108,187 + Shewana3_0097 0.23 +0.2
108,425 + Shewana3_0097 0.55 +0.1
108,433 - Shewana3_0097 0.56 +0.1
108,433 - Shewana3_0097 0.56 -0.6
108,470 - Shewana3_0097 0.61 +0.2
108,531 + Shewana3_0097 0.69 +0.2
108,538 - Shewana3_0097 0.70 +0.5
108,584 - Shewana3_0097 0.77 +0.7
108,653 - Shewana3_0097 0.86 +0.2
108,762 - -0.1
108,816 + -0.1
108,826 + -0.5
108,826 + +0.2
108,834 - -0.3
108,834 - -0.5
108,834 - -0.1
108,850 - +0.2
108,894 + +0.1
108,894 + -0.7
108,901 + -0.4
108,902 - -0.5
108,902 - -0.0
108,909 - -0.2
108,936 + +0.2
108,936 + +0.2
108,936 + -0.2
108,944 - -0.0
108,944 - +0.5
108,944 - -0.5
108,946 - -0.3

Or see this region's nucleotide sequence