Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4342 and Shewana3_4343 are separated by 15 nucleotides Shewana3_4343 and Shewana3_4344 are separated by 27 nucleotides Shewana3_4344 and Shewana3_4345 are separated by 38 nucleotides Shewana3_4345 and Shewana3_4346 are separated by 17 nucleotides Shewana3_4346 and Shewana3_4347 overlap by 4 nucleotides Shewana3_4347 and Shewana3_4348 are separated by 65 nucleotides
Shewana3_4342: Shewana3_4342 - putative mercuric transport protein (RefSeq), at 229,216 to 229,611
_4342
Shewana3_4343: Shewana3_4343 - mercuric transport protein periplasmic component (RefSeq), at 229,627 to 229,902
_4343
Shewana3_4344: Shewana3_4344 - putative mercury transport protein MerC (RefSeq), at 229,930 to 230,355
_4344
Shewana3_4345: Shewana3_4345 - putative mercuric reductase (RefSeq), at 230,394 to 232,079
_4345
Shewana3_4346: Shewana3_4346 - transcriptional regulator MerD (RefSeq), at 232,097 to 232,462
_4346
Shewana3_4347: Shewana3_4347 - putative mercury resistance protein (RefSeq), at 232,459 to 232,695
_4347
Shewana3_4348: Shewana3_4348 - hypothetical protein (RefSeq), at 232,761 to 232,973
_4348
Position (kb)
230
231
232
233 Strain fitness (log2 ratio)
-1
0
1 at 229.427 kb on + strand, within Shewana3_4342 at 229.432 kb on + strand, within Shewana3_4342 at 229.446 kb on + strand, within Shewana3_4342 at 229.674 kb on + strand, within Shewana3_4343 at 229.735 kb on - strand, within Shewana3_4343 at 229.784 kb on - strand, within Shewana3_4343 at 229.992 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.245 kb on - strand, within Shewana3_4344 at 230.252 kb on - strand, within Shewana3_4344 at 230.297 kb on + strand, within Shewana3_4344 at 230.307 kb on + strand, within Shewana3_4344 at 230.430 kb on - strand at 230.492 kb on - strand at 230.519 kb on - strand at 230.552 kb on + strand at 230.669 kb on - strand, within Shewana3_4345 at 230.812 kb on + strand, within Shewana3_4345 at 230.968 kb on - strand, within Shewana3_4345 at 231.014 kb on + strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.602 kb on - strand, within Shewana3_4345 at 231.751 kb on - strand, within Shewana3_4345 at 231.754 kb on - strand, within Shewana3_4345 at 232.104 kb on + strand at 232.439 kb on - strand at 232.464 kb on - strand at 232.616 kb on - strand, within Shewana3_4347 at 232.651 kb on - strand, within Shewana3_4347 at 232.732 kb on - strand at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.910 kb on + strand, within Shewana3_4348 at 232.987 kb on - strand at 233.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 229,427 + Shewana3_4342 0.53 -0.1 229,432 + Shewana3_4342 0.55 -0.1 229,446 + Shewana3_4342 0.58 +0.5 229,674 + Shewana3_4343 0.17 +0.2 229,735 - Shewana3_4343 0.39 +0.2 229,784 - Shewana3_4343 0.57 -1.0 229,992 + Shewana3_4344 0.15 +0.1 230,244 + Shewana3_4344 0.74 +0.2 230,244 + Shewana3_4344 0.74 +0.1 230,245 - Shewana3_4344 0.74 -0.1 230,252 - Shewana3_4344 0.76 +0.1 230,297 + Shewana3_4344 0.86 +0.0 230,307 + Shewana3_4344 0.88 +0.1 230,430 - +0.2 230,492 - -0.6 230,519 - -1.0 230,552 + +0.3 230,669 - Shewana3_4345 0.16 -0.0 230,812 + Shewana3_4345 0.25 +0.5 230,968 - Shewana3_4345 0.34 +0.1 231,014 + Shewana3_4345 0.37 +0.3 231,602 - Shewana3_4345 0.72 +0.4 231,602 - Shewana3_4345 0.72 +0.3 231,751 - Shewana3_4345 0.80 +0.1 231,754 - Shewana3_4345 0.81 -0.2 232,104 + +0.3 232,439 - +0.4 232,464 - -0.5 232,616 - Shewana3_4347 0.66 +0.2 232,651 - Shewana3_4347 0.81 +0.2 232,732 - +0.2 232,910 + Shewana3_4348 0.70 -0.1 232,910 + Shewana3_4348 0.70 -0.2 232,910 + Shewana3_4348 0.70 +0.2 232,987 - -0.3 233,069 - -0.1
Or see this region's nucleotide sequence