Experiment: sodium fluoride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4160 and Shewana3_4161 overlap by 4 nucleotides Shewana3_4161 and Shewana3_4162 are separated by 7 nucleotides Shewana3_4162 and Shewana3_4163 are separated by 1 nucleotides
Shewana3_4160: Shewana3_4160 - S-adenosylhomocysteine hydrolase (RefSeq), at 21,935 to 22,345
_4160
Shewana3_4161: Shewana3_4161 - hypothetical protein (RefSeq), at 22,342 to 23,283
_4161
Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915
_4162
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 22.613 kb on - strand, within Shewana3_4161 at 22.766 kb on + strand, within Shewana3_4161 at 22.836 kb on + strand, within Shewana3_4161 at 22.848 kb on + strand, within Shewana3_4161 at 22.915 kb on + strand, within Shewana3_4161 at 23.000 kb on + strand, within Shewana3_4161 at 23.456 kb on - strand at 23.458 kb on + strand at 23.458 kb on - strand at 23.492 kb on + strand at 23.571 kb on + strand, within Shewana3_4162 at 23.848 kb on + strand, within Shewana3_4162 at 24.053 kb on - strand, within Shewana3_4162 at 24.120 kb on - strand, within Shewana3_4162 at 24.165 kb on + strand, within Shewana3_4162 at 24.206 kb on - strand, within Shewana3_4162 at 24.242 kb on - strand, within Shewana3_4162 at 24.323 kb on - strand, within Shewana3_4162 at 24.373 kb on + strand, within Shewana3_4162 at 24.381 kb on - strand, within Shewana3_4162 at 24.601 kb on - strand, within Shewana3_4162 at 24.847 kb on + strand, within Shewana3_4162 at 24.875 kb on + strand, within Shewana3_4162 at 25.016 kb on + strand, within Shewana3_4162 at 25.082 kb on + strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.100 kb on - strand, within Shewana3_4162 at 25.137 kb on + strand, within Shewana3_4162 at 25.178 kb on + strand, within Shewana3_4162 at 25.202 kb on - strand, within Shewana3_4162 at 25.285 kb on - strand, within Shewana3_4162 at 25.412 kb on + strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.543 kb on - strand, within Shewana3_4162 at 25.864 kb on - strand at 25.886 kb on - strand at 25.900 kb on + strand at 25.908 kb on - strand at 25.966 kb on - strand at 25.966 kb on - strand at 26.126 kb on + strand, within Shewana3_4163 at 26.134 kb on - strand, within Shewana3_4163 at 26.278 kb on + strand, within Shewana3_4163 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 200 mM remove 22,613 - Shewana3_4161 0.29 -0.2 22,766 + Shewana3_4161 0.45 +0.4 22,836 + Shewana3_4161 0.52 +0.8 22,848 + Shewana3_4161 0.54 -0.6 22,915 + Shewana3_4161 0.61 +0.1 23,000 + Shewana3_4161 0.70 +0.1 23,456 - -0.4 23,458 + +0.2 23,458 - -0.4 23,492 + -0.7 23,571 + Shewana3_4162 0.11 +0.5 23,848 + Shewana3_4162 0.21 -1.4 24,053 - Shewana3_4162 0.29 -0.1 24,120 - Shewana3_4162 0.32 -2.0 24,165 + Shewana3_4162 0.33 -0.6 24,206 - Shewana3_4162 0.35 -1.2 24,242 - Shewana3_4162 0.36 -0.7 24,323 - Shewana3_4162 0.39 -2.0 24,373 + Shewana3_4162 0.41 -1.6 24,381 - Shewana3_4162 0.42 -0.2 24,601 - Shewana3_4162 0.50 -3.3 24,847 + Shewana3_4162 0.59 -0.5 24,875 + Shewana3_4162 0.60 -1.7 25,016 + Shewana3_4162 0.66 +0.5 25,082 + Shewana3_4162 0.68 -0.0 25,090 - Shewana3_4162 0.69 -0.4 25,090 - Shewana3_4162 0.69 -1.1 25,100 - Shewana3_4162 0.69 -1.2 25,137 + Shewana3_4162 0.70 +0.1 25,178 + Shewana3_4162 0.72 -0.1 25,202 - Shewana3_4162 0.73 -1.0 25,285 - Shewana3_4162 0.76 -0.5 25,412 + Shewana3_4162 0.81 -0.8 25,420 - Shewana3_4162 0.81 +0.2 25,420 - Shewana3_4162 0.81 -0.5 25,420 - Shewana3_4162 0.81 -0.7 25,420 - Shewana3_4162 0.81 +1.1 25,543 - Shewana3_4162 0.86 +1.1 25,864 - -0.9 25,886 - -0.9 25,900 + +0.3 25,908 - -0.9 25,966 - +1.1 25,966 - -1.7 26,126 + Shewana3_4163 0.17 -1.0 26,134 - Shewana3_4163 0.18 -0.9 26,278 + Shewana3_4163 0.30 +0.6 26,566 - Shewana3_4163 0.53 +0.1 26,583 + Shewana3_4163 0.55 -0.2 26,590 + Shewana3_4163 0.55 -0.6 26,590 + Shewana3_4163 0.55 -0.7 26,598 - Shewana3_4163 0.56 -1.9 26,598 - Shewana3_4163 0.56 +0.8 26,632 - Shewana3_4163 0.59 -1.9 26,802 + Shewana3_4163 0.73 -0.7 26,802 + Shewana3_4163 0.73 +0.6
Or see this region's nucleotide sequence