Strain Fitness in Shewanella loihica PV-4 around Shew_3519

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3517 and Shew_3518 are separated by 10 nucleotidesShew_3518 and Shew_3519 overlap by 4 nucleotidesShew_3519 and Shew_3520 overlap by 4 nucleotides Shew_3517: Shew_3517 - histidine ammonia-lyase (RefSeq), at 4,203,149 to 4,204,711 _3517 Shew_3518: Shew_3518 - thioesterase superfamily protein (RefSeq), at 4,204,722 to 4,205,156 _3518 Shew_3519: Shew_3519 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 4,205,153 to 4,205,926 _3519 Shew_3520: Shew_3520 - hypothetical protein (RefSeq), at 4,205,923 to 4,208,448 _3520 Position (kb) 4205 4206Strain fitness (log2 ratio) -1 0 1at 4204.231 kb on - strand, within Shew_3517at 4204.862 kb on - strand, within Shew_3518at 4204.885 kb on - strand, within Shew_3518at 4204.931 kb on - strand, within Shew_3518at 4206.357 kb on + strand, within Shew_3520at 4206.644 kb on + strand, within Shew_3520at 4206.875 kb on + strand, within Shew_3520

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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4,204,231 - Shew_3517 0.69 +0.5
4,204,862 - Shew_3518 0.32 +0.8
4,204,885 - Shew_3518 0.37 +0.8
4,204,931 - Shew_3518 0.48 -0.4
4,206,357 + Shew_3520 0.17 +0.8
4,206,644 + Shew_3520 0.29 +0.9
4,206,875 + Shew_3520 0.38 +1.4

Or see this region's nucleotide sequence